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174 search results found

Qa_bible ⭐ 1,674

“Библия QA” - это обновляемая база знаний объемом 560+ страниц

Fastp ⭐ 1,602

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.

Multiqc ⭐ 1,159

Aggregate results from bioinformatics analyses across many samples into a single report.

Notquite0dayfriday ⭐ 721

This is a repo which documents real bugs in real software to illustrate trends, learn how to prevent or find them more quickly.

Coderedcms ⭐ 642

Wagtail + CodeRed Extensions enabling rapid development of marketing-focused websites.

Qctools ⭐ 289

QCTools (Quality Control Tools for Video Preservation) is a free and open source software tool that helps users analyze and understand their digitized video files through use of audiovisual analytics and filtering. QCTools is funded by the National Endowment for the Humanities and the Knight Foundation, and is developed by the Bay Area Video Coalition.

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

Crowd Kit ⭐ 174

Control the quality of your labeled data with the Python tools you already know.

Minion_qc ⭐ 174

Quality control for MinION sequencing data

Coveragechecker ⭐ 170

Allows old code to use new standards

Sqanti3 ⭐ 157

Tool for the Quality Control of Long-Read Defined Transcriptomes

Afterqc ⭐ 157

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Sequana ⭐ 136

Sequana: a set of Snakemake NGS pipelines

Blobtools ⭐ 136

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

BAM Statistics, Feature Counting and Annotation

Gwas_scripts ⭐ 127

Codebook from my GWAS cookbook

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

A Not So Very Intelligent Fuzzer: An advanced fuzzing framework designed to find vulnerabilities in C/C++ code.

Quicknat_pytorch ⭐ 99

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

Fastq.bio ⭐ 93

An interactive web tool for quality control of DNA sequencing data

Kneaddata ⭐ 78

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

A Framework for Dimensionality Reduction in R

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

Minimal but speedy quality control for nanopore reads in Rust 🐻

fork of mutant with inline disable comments and a few different mutations.

Visualqc ⭐ 68

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

A toolkit for QC and visualization of ATAC-seq results.

Armbian OS rolling releases

Osm Revert ⭐ 53

⏪ OpenStreetMap Changeset Reverter — CLI + Website

Ampcrowd ⭐ 51

A RESTful web service that runs microtasks across multiple crowds, provides quality control techniques, and is easily extensible.

A C++ drop-in replacement of FastQC to assess the quality of sequence read data

Static Analyzer for Java Code with Machine Learning in Mind

Mindcontrol ⭐ 48

MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:

A general metagenomics data mining system focus on robust microbiome research

Ncov Tools ⭐ 44

Small collection of tools for performing quality control on coronavirus sequencing data and genomes

Pipeliner ⭐ 44

An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

Praktomat ⭐ 42

quality control for programming assignments

libmpv based application for quality control of videos

A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant

Mhkit Python ⭐ 38

MHKiT-Python provides the marine renewable energy (MRE) community tools for data processing, visualization, quality control, resource assessment, and device performance.

Ocean Data Qc ⭐ 38

Tool for QC1 (1st level of Quality Control) on Hydrographic Cruise Data.

Nanopore data analysis in R

An R package for Quality Control Charts

Quality Control of Oceanographic Data

☑️ 🌊 IOOS QARTOD and other Quality Control tests implemented in Python

Picardmetrics ⭐ 34

🚦 Run Picard on BAM files and collate 90 metrics into one file.

Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data

Ghpr.nunit ⭐ 32

Adapter for NUnit 3 (generate HTML report for NUnit 3)

Runcharter ⭐ 32

Automating run chart analysis for faceted displays of data across multiple metrics or locations

R package for quality control of plink genetic datasets

Prolfqua ⭐ 29

R package for protein differential expression analysis

Parallelhelper ⭐ 28

Parallel Helper is a static code analyzer for C# projects that supports the development of parallel and asynchronous code. The analyzer is built with the help of the .NET Compiler Platform (Roslyn) and is available as a NuGet package as well as a Visual Studio extension.

Sagemaker Defect Detection ⭐ 28

Detect Defects in Products from their Images using Amazon SageMaker

Zaojiu Player ⭐ 28

A live stream video player, compatible with mobile.

A Medical Imaging Quality Assurance tool

Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.

Wind Waker Awesome Edition ⭐ 27

Imagine a texture remake of The Legend of Zelda: The Wind Waker with almost no quality control on textures.

Gwaspipeline ⭐ 26

Spccharter ⭐ 24

Creates multiple SPC / process behaviour charts, automatically detecting signals of process change and revising centre lines and control limits.

Rabbitqc ⭐ 24

The new version is available at https://github.com/RabbitBio/RabbitQCPlus

Alphaviz ⭐ 24

AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.

Titanlib ⭐ 24

Automatic data quality control software library

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data.

Single-Cell Sequencing Quality Control and Processing Software

Atacseqqc ⭐ 22

ATAC-seq Quality Control

Matlab_owc ⭐ 22

The OWC Matlab toolbox

Reporting and exchange format for mass spectrometry quality control data

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

SambaR: Snp datA Management and Basic Analyses in R

medical image visualization library and development toolkit

A testing suite for automatic quality control checks of subsurface ocean temperature observations

Missioncontrol ⭐ 21

Real-time monitoring of Firefox release health

Mvp_aaa_codelabs ⭐ 21

Queries to perform qc and analysis on genomes in BigQuery

Argo_processing ⭐ 20

Code library to support processing and quality control of BGC Argo floats.

SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.

Quick Read Quality Control

Npyc Toolbox ⭐ 18

The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.

Fastquick ⭐ 18

Ultra Fast NGS Data QC Tool

Quality control tools for nanopore sequencing data

Pipelines for the production of Treeval data

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Genotools ⭐ 15

GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.

One Shot Steel Surfaces ⭐ 15

One-Shot Recognition of Manufacturing Defects in Steel Surfaces

Contdataqc ⭐ 15

Quality control checks on continuous data. Example data is from a HOBO data logger with 30 minute intervals.

Lighthouse Keeper ⭐ 15

This package is no longer under active development. We recommend using Lighthouse CI. CLI tool for running Google’s Lighthouse checks

采用开源论坛系统Flarum建设GATK中文社区，该论坛所有帖子将以markdown代码形式发帖，所对应的broad的GATK主页是；https://software.broadinstitute.o 本站网址： https://gatk-chinese.github.io/forum/

metaX: a flexible and comprehensive software for processing omics data.

Digitalcellsorter ⭐ 14

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

Liquibase Linter ⭐ 13

Quality control for your Liquibase scripts

Lecture Notes for "Software Quality Metrics" course in HSE University, 2023-2024

Analysisplatform ⭐ 13

Python based web application to import, connect and analyze manufacturing data from multiple data sources.

Mhkit Matlab ⭐ 13

MHKiT-MATLAB provides the marine renewable energy (MRE) community tools for data processing, visualization, quality control, resource assessment, and device performance.

Manuscript describing ChronQC is now available online in Bioinformatics

Pureplayer ⭐ 13

HTML5 Javascript player

Chromeqc ⭐ 13

ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads

Sixsigma ⭐ 13

SixSigma R package

Perspective ⭐ 13

Graphing library for quality control in event-driven systems

1-100 of 174 search results

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