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66 search results found

Multiqc ⭐ 1,159

Aggregate results from bioinformatics analyses across many samples into a single report.

Notquite0dayfriday ⭐ 721

This is a repo which documents real bugs in real software to illustrate trends, learn how to prevent or find them more quickly.

Coderedcms ⭐ 642

Wagtail + CodeRed Extensions enabling rapid development of marketing-focused websites.

Crowd Kit ⭐ 174

Control the quality of your labeled data with the Python tools you already know.

Afterqc ⭐ 157

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Blobtools ⭐ 136

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

Kneaddata ⭐ 78

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

Visualqc ⭐ 68

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Osm Revert ⭐ 53

⏪ OpenStreetMap Changeset Reverter — CLI + Website

Ampcrowd ⭐ 51

A RESTful web service that runs microtasks across multiple crowds, provides quality control techniques, and is easily extensible.

A general metagenomics data mining system focus on robust microbiome research

Pipeliner ⭐ 44

An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

Ncov Tools ⭐ 44

Small collection of tools for performing quality control on coronavirus sequencing data and genomes

Praktomat ⭐ 42

quality control for programming assignments

Mhkit Python ⭐ 38

MHKiT-Python provides the marine renewable energy (MRE) community tools for data processing, visualization, quality control, resource assessment, and device performance.

Ocean Data Qc ⭐ 38

Tool for QC1 (1st level of Quality Control) on Hydrographic Cruise Data.

Quality Control of Oceanographic Data

☑️ 🌊 IOOS QARTOD and other Quality Control tests implemented in Python

Sagemaker Defect Detection ⭐ 28

Detect Defects in Products from their Images using Amazon SageMaker

Alphaviz ⭐ 24

AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.

Titanlib ⭐ 24

Automatic data quality control software library

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

Single-Cell Sequencing Quality Control and Processing Software

Reporting and exchange format for mass spectrometry quality control data

medical image visualization library and development toolkit

A testing suite for automatic quality control checks of subsurface ocean temperature observations

Missioncontrol ⭐ 21

Real-time monitoring of Firefox release health

Npyc Toolbox ⭐ 18

The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.

Quality control tools for nanopore sequencing data

One Shot Steel Surfaces ⭐ 15

One-Shot Recognition of Manufacturing Defects in Steel Surfaces

Genotools ⭐ 15

GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.

Digitalcellsorter ⭐ 14

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

Manuscript describing ChronQC is now available online in Bioinformatics

Quality Control ⭐ 13

Carnegie Hall Archives maintains a series of small, portable scripts to expedite batch processes for quality control on our Digital Collections.

Biovarase ⭐ 13

a clinical quality control data management project

INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search

Genome Seek ⭐ 12

Clinical Whole Genome Sequencing Pipeline

Longread_plots ⭐ 10

A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.

This is a read-only mirror, comments, issues and pull requests are very welcome on https://git.ufz.de/rdm-software/saqc.

Pytolemaic ⭐ 10

Toolbox for analysis of model's quality and model's description. For further details see

Quality Control ⭐ 9

Consistency Checks for spreadsheet

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

Argodmqc_owc ⭐ 9

Argo float salinity calibration software

Ribominer ⭐ 9

a toolset for mining multi-dimensional features of the translatome with ribosome profiling data

Quality Control Using Deep Learning ⭐ 9

A deep learning based quality control pipeline to detect defective products

Supermatrix ⭐ 8

scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms

A comprehensive quality-control and quantification RNA-seq pipeline

Display segmentation results over MRI scans in Jupyter notebooks.

Processing, quality control and analysis of GAM datsets

Isimip Qc ⭐ 8

A command line tool for the quality control of climate impact data of the ISIMIP project.

Lescroart2023 ⭐ 7

Archived code for analyses in "Extensive phylogenomic discordance and the complex evolutionary history of the Neotropical cat genus Leopardus" (Lescroart et al. 2023, MBE)

Quality Control Tools for Ocean Mapping

Lavalampplot ⭐ 6

instructions, python and R code for generating lava lamp plots of kmer coverage

Quality Control Summary Pipeline for Array-based Genome Studio Projects (idats, raw genotype quality)

Bgcargodmqc ⭐ 6

python package for performing DMQC on BGC-Argo data

PCP Quality Assessment Protocol

🧩 Mass-revert extension designed for osm-revert

Industry Classifier ⭐ 6

deep learning based visual inspection system for industrial quality control

Statistical Quality Control ⭐ 6

This repo contains a powerful tool made using python which is used to visualize, analyse and finally assess the quality of the product depending upon the given observations

Gwas Utils ⭐ 6

Collection of tools and scripts to manage GWAS Catalog related infrastructure.

Bam Lorenz Coverage ⭐ 6

Generate Lorenz plots and Coverage plots directly from BAM files

Automated and friendly RNA-seq analysis (deprecated)

An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

QC report generator for Hi-C pairs file

Quality control plotting for long reads

Quality Control for DArT SNPs

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