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Search results for python neuroscience

263 search results found

Mne Python ⭐ 2,449

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

Psychopy ⭐ 1,555

For running psychology and neuroscience experiments

Brainflow ⭐ 1,138

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

Awesome Neuroscience ⭐ 974

A curated list of awesome neuroscience libraries, software and any content related to the domain.

Snntorch ⭐ 935

Deep and online learning with spiking neural networks in Python

Brian is a free, open source simulator for spiking neural networks.

A Python library for creating and simulating large-scale brain models

Braindecode ⭐ 638

Deep learning software to decode EEG, ECG or MEG signals

Mother of All BCI Benchmarks

Csinva.github.io ⭐ 515

Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.

Brainrender ⭐ 480

a python based software for visualization of neuroanatomical and morphological data.

A Software Framework for Neuromorphic Computing

Brainpy ⭐ 438

Brain Dynamics Programming in Python

Eyeloop ⭐ 383

EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.

Neurolib ⭐ 369

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

A toolbox for integrated information theory.

Brainiak ⭐ 315

Brain Imaging Analysis Kit

Parameterizing neural power spectra into periodic & aperiodic components.

Visualizer for large-scale and interactive ray-tracing of neurons

Neurokit.py ⭐ 253

A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).

Brain Modeling Toolkit

Nupic.torch ⭐ 230

Numenta Platform for Intelligent Computing PyTorch libraries

Opensesame ⭐ 226

Graphical experiment builder for the social sciences

Timeseries analysis for neuroscience data

Neurogym ⭐ 219

A curated collection of neuroscience tasks with a common interface.

Antropy ⭐ 203

AntroPy: entropy and complexity of (EEG) time-series in Python

Clinica ⭐ 201

Software platform for clinical neuroimaging studies

Euclidean Distance Transform 3d ⭐ 201

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

Neuromorphic Computing Guide ⭐ 191

Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.

Bluepyopt ⭐ 190

Blue Brain Python Optimisation Library

Org.geppetto ⭐ 184

Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

Elephant ⭐ 174

Elephant is the Electrophysiology Analysis Toolkit

Cellfinder ⭐ 170

Automated 3D cell detection in very large images

A Python API for working with Neurodata stored in the NWB Format

Pytorch_connectomics ⭐ 151

PyTorch Connectomics: segmentation toolbox for EM connectomics

Neurosummerschools ⭐ 150

List of summer schools in neuroscience and related fields

Python Meegkit ⭐ 149

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python

Eegrunt ⭐ 147

A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse

Facemap ⭐ 147

Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

Visbrain ⭐ 143

A multi-purpose GPU-accelerated open-source suite for brain data visualization

Rastermap ⭐ 140

a visualization method for neural data

Variational Animal Motion Embedding - A tool for time series embedding and clustering

Ratinabox ⭐ 135

A python package for modelling locomotion in complex environments and spatially/velocity selective cell activity.

Uncertainpy ⭐ 131

Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.

Analyzing_neural_time_series ⭐ 124

python implementations of Analyzing Neural Time Series Textbook

simulations for the Computational Cognitive Neuroscience textbook

Mne Bids ⭐ 110

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Expyriment ⭐ 109

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

Spectral_connectivity ⭐ 109

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

A Python implementation of the Preprocessing Pipeline (PREP) for EEG data

Mne Bids Pipeline ⭐ 106

Automatically process entire electrophysiological datasets using MNE-Python.

Brainreg ⭐ 103

Automated 3D brain registration with support for multiple species and atlases.

Neuropythy ⭐ 102

A neuroscience library for Python, intended to complement the existing nibabel library.

Bg Atlasapi ⭐ 97

A lightweight python module to interact with atlases for systems neuroscience

Biologically-realistic recurrent convolutional neural networks

Nengo Gui ⭐ 91

Nengo interactive visualizer

Inner ear models for Python

Pcntoolkit ⭐ 91

Toolbox for normative modelling and spatial inference of neuroimaging data. https://pcntoolkit.readthedocs.io/en/latest/

Tvb Root ⭐ 91

Main TVB codebase

Autopilot ⭐ 89

Distributed behavioral experiments

Dyconnmap ⭐ 89

A dynamic connectome mapping module in python.

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

PyoMyo - Python Opensource Myo armband library

Python library for analysis of neuroanatomical data.

Psyneulink ⭐ 79

A block modeling system for cognitive neuroscience

Train PyTorch Models using the Genetic Algorithm with PyGAD

Temporal Network Tools

Spyking Circus ⭐ 78

Fast and scalable spike sorting in python

Nengo Dl ⭐ 77

Deep learning integration for Nengo

K Wave Python ⭐ 76

A Python interface to k-Wave GPU accelerated binaries

Mne Icalabel ⭐ 76

Automatic labeling of ICA components in Python.

Ngc Learn ⭐ 71

NGC-Learn: Predictive Coding and Neurobiologically-Motivated Learning in Python

Pulse2percept ⭐ 71

A Python-based simulation framework for bionic vision

Keras for Science

Labhacks ⭐ 68

Resources for data driven neuroscientists.

Visualqc ⭐ 68

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Awesome Tech Rss ⭐ 66

List of awesome RSS channels related to startup, science and technology.

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

Electrophys Feature Extraction Library

Tensorpac ⭐ 59

Phase-Amplitude Coupling under Python

Mesmerize ⭐ 57

Platform for Calcium Imaging analysis. DEPRECATED.

IBL core shared libraries

Brian2cuda ⭐ 56

A brian2 extension to simulate spiking neural networks on GPUs

Deepslice ⭐ 56

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

Pymindaffectbci ⭐ 55

Python SDK for high performance on-line Brain Computer Interface development.

Pytorch_hmax ⭐ 53

Implementation of the HMAX model of vision in PyTorch

Multiple hypothesis testing in Python

Spyglass ⭐ 50

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

Representational Similarity Analysis on MEG and EEG data

Netneurotools ⭐ 47

Useful tools from the Network Neuroscience Lab

Pyllusion ⭐ 45

A Parametric Framework to Generate Visual Illusions using Python

Siibra Python ⭐ 44

Software interfaces for interacting with brain atlases - Python client

Mesmerize Core ⭐ 43

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

Osparc Simcore ⭐ 40

🐼 osparc-simcore simulation framework

Itktubetk ⭐ 39

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

A framework for real-time brain signal streaming with MNE-Python.

Python In Neuroscience Tutorials ⭐ 38

Collection of tutorials about methods of computational neuroscience using Python

Synthetic ⭐ 37

Symbolic Generators for Complex Networks

Combinato ⭐ 36

Automatic spike sorting, cluster visualization, spike sorting GUIs

code for storing neurodata images and image annotations

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