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Search results for phylogenetics phylogenomics
phylogenetics
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phylogenomics
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21 search results found
Ete
⭐
730
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
Iq Tree
⭐
125
Efficient phylogenomic software by maximum likelihood
Trifusion
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61
Streamlining phylogenomic data gathering, processing and visualization
Clipkit
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54
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
Microbetrace
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53
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Phykit
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44
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Get_phylomarkers
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39
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Aniclustermap
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38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Busco_phylogenomics
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26
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
Phylociraptor
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23
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
Orthosnap
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16
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Libpll
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15
Phylogenetic Likelihood Library
Tib Filoinfo
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14
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
Cafeplotter
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13
A tool for plotting CAFE5 gene family expansion/contraction result
Strainhub
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12
Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
Segul
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11
An ultrafast and memory efficient tool for phylogenomics
Supermatrix
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8
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
Captus
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8
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Fastdtlmapper
⭐
7
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
Phylogenies.jl
⭐
6
The BioJulia package for working with phylogenetic trees and geneologies.
Phylter
⭐
6
Detection of outlier genes and species in phylogenomics
Microbetrace
⭐
5
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Njmerge
⭐
5
A tool for divide-and-conquer tree estimation via a shared distance matrix
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1-21 of 21 search results
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