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Search results for r phylogenetics
phylogenetics
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26 search results found
Phangorn
⭐
196
Phylogenetic analysis in R
Babette
⭐
40
babette is an R package to work with BEAST2
Get_phylomarkers
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39
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Phylotar
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24
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
Phylobase
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16
An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
Treetools
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15
Create, modify and analyse phylogenetic trees in R
Beautier
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13
R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
Rnexml
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13
Implementing semantically rich NeXML I/O in R
Multree
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12
Performs MCMCglmm on multiple phylogenetic trees
Datelife
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11
R package containing datelife's core functionality
Phylopath
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10
Perform phylogenetic path analysis in R.
Phylosamp
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10
The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linkage and sample size calculations for phylogenetic studies.
Graphphylo
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9
visualization of phylogenetic output files
Phylogenetics
⭐
8
CRAN Task View: Phylogenetics
Rncl
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8
An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data
Sensiphy
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8
R package to perform sensitivity analysis for comparative methods
Course R Mol Data
⭐
8
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
Aphylo
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6
Statistical inference of genetic functions in phylogenetic trees
Phylter
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6
Detection of outlier genes and species in phylogenomics
Nltt
⭐
6
Repository for the R nLTT package
Phylodiv
⭐
6
Phylogenetic Biodiversity Query Tools
Treelikeness
⭐
6
Developing a statistic to test tree likeness and identify genes that don't fit the model.
Daisieprep
⭐
6
Extracts phylogenetic island community data from phylogenetic trees
Scistreer
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5
R/Rcpp implementation of the ScisTree algorithm
Coelacanthevolution
⭐
5
Analyses of coelacanth morphometrics, disparity, phylogeny, and rate of evolution
Treesearch
⭐
5
R package for phylogenetic tree search under custom optimality criteria
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1-26 of 26 search results
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