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Search results for phylogenomics
phylogenomics
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37 search results found
Ete
⭐
730
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
Anvio
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396
An analysis and visualization platform for 'omics data
Iq Tree
⭐
125
Efficient phylogenomic software by maximum likelihood
Nullarbor
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80
💾 📃 "Reads to report" for public health and clinical microbiology
Trifusion
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61
Streamlining phylogenomic data gathering, processing and visualization
Microbetrace
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53
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Phykit
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44
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Clipkit
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44
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
Get_phylomarkers
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39
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Aniclustermap
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38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Synnet Pipeline
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32
Workflow for Building Microsynteny Networks
Hyde
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29
Hybridization detection using phylogenetic invariants
Phylofisher
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27
PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
Busco_phylogenomics
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26
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
Phylociraptor
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23
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
Phantasm
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20
PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
Orthosnap
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16
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Libpll
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15
Phylogenetic Likelihood Library
Tib Filoinfo
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14
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
Cafeplotter
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13
A tool for plotting CAFE5 gene family expansion/contraction result
Strainhub
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12
Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
Syntenet
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12
An R package to infer and analyze synteny networks from protein sequences
Segul
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11
An ultrafast and memory efficient tool for phylogenomics
Ngsphy
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9
NGSphy: phylogenomic simulation of next-generation sequencing data
Coimbra Et Al 2021_currbiol
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9
Code used to analyse WGS data of giraffe in Coimbra et al. 2021 (https://doi.org/10.1016/j.cub.2021.04.033)
Captus
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8
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Supermatrix
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8
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
Kitsune
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8
a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.
Lescroart2023
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7
Archived code for analyses in "Extensive phylogenomic discordance and the complex evolutionary history of the Neotropical cat genus Leopardus" (Lescroart et al. 2023, MBE)
Clann
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7
Clann: constructing consensus trees and supertrees from multiple source trees
Fastdtlmapper
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7
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
Phylter
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6
Detection of outlier genes and species in phylogenomics
Phylogenies.jl
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6
The BioJulia package for working with phylogenetic trees and geneologies.
Microbetrace
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5
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Hyde Cnn
⭐
5
Hybridization Detection with Convolutional Neural Networks
Njmerge
⭐
5
A tool for divide-and-conquer tree estimation via a shared distance matrix
Tada
⭐
5
A Snakemake-workflow to sample taxa from sequence databases based on taxonomical or phylogenetic information
Related Searches
Phylogenetics Phylogenomics (26)
Bioinformatics Phylogenomics (23)
Python Phylogenomics (16)
Genomics Phylogenomics (12)
1-37 of 37 search results
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