Nullarbor
💾 📃 "Reads to report" for public health and clinical microbiology
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Krakenuniq | 201 | 3 months ago | 107 | gpl-3.0 | C++ | |||||
| 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results | ||||||||||
| Nullarbor | 80 | 4 years ago | 51 | gpl-2.0 | Perl | |||||
| :floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology | ||||||||||
| Flextaxd | 54 | 5 months ago | 4 | September 30, 2019 | 5 | gpl-3.0 | Python | |||
| FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more ) | ||||||||||
| Kraken_db_install_scripts | 36 | 7 years ago | 6 | mit | Perl | |||||
| Updated Kraken DB install scripts to cope with new-ish NCBI structure | ||||||||||
| Metameta | 18 | 5 years ago | 3 | other | Python | |||||
| Bohra | 12 | 3 years ago | 52 | March 09, 2021 | 10 | gpl-3.0 | Python | |||
| A pipeline for bioinformatics analysis of bacterial genomes | ||||||||||
| Kraken Trawl | 7 | 4 years ago | 6 | gpl-3.0 | Python | |||||
| A tool to help create custom `kraken` databases | ||||||||||
| Acdc | 7 | 2 years ago | mit | C++ | ||||||
| acdc - (a)utomated (c)ontamination (d)etection and (c)onfidence estimation for single-cell genome data | ||||||||||
| K2mem | 6 | 3 years ago | 2 | other | C++ | |||||
| K2Mem is a variant of Kraken 2 taxonomic sequence classification system that can learn from the previous classifications. | ||||||||||
| 2019_classifiers_benchmark | 5 | 4 years ago | 4 | HTML | ||||||
| Benchmarking of metagenomic classifiers | ||||||||||
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