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Search results for perl fastq
fastq
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perl
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37 search results found
Trimgalore
⭐
382
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Readfq
⭐
105
Fast multi-line FASTA/Q reader in several programming languages
Nullarbor
⭐
80
💾 📃 "Reads to report" for public health and clinical microbiology
Phylosift
⭐
68
Phylogenetic and taxonomic analysis for genomes and metagenomes
Assembly_improvement
⭐
39
Improve the quality of a denovo assembly by scaffolding and gap filling
Fasta_utilities
⭐
37
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
Qc3
⭐
27
QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
Fastascripts
⭐
26
Manipulate FASTA files
Asub
⭐
22
A unified array job submitter for LSF, SGE/UGE and Slurm
Bioinfo
⭐
19
Various bioinformatics tools
Pairfq
⭐
17
Sync paired-end FASTA/Q files and keep singleton reads
Bio Tradis
⭐
15
A set of tools to analyse the output from TraDIS analyses
Miscperlscripts
⭐
15
Small collection of random useful perl scripts
Icshape
⭐
14
icSHAPE pipeline
Rageseq
⭐
13
RAGE-seq scripts
Autoadapt
⭐
11
Automatic quality control for FASTQ sequencing files
Imonitor
⭐
11
This script use to analyze the immune repertoire sequenced by high throughtput sequencing
Clipseqtools
⭐
11
A suite for the analysis of CLIP-Seq datasets.
Qbrc Neoantigen Pipeline
⭐
11
QBRC Neoantigen calling pipeline with CSiN calculation embedded
Damidseq_pipeline
⭐
10
An automated pipeline for processing DamID sequencing datasets
Bioscripts
⭐
10
a bucket of bioinformatics scripts
Bayexer
⭐
10
A Demultiplexing Tool for Illumina Sequencers
Ultraplexer
⭐
9
The UltraPlexer is a kmer-based tool that allows assigning non-barcoded long-read sequences generated by the Oxford Nanopore Technology to isolates, by matching them to barcoded short-read sequences generated by Illumina Technology.
Metacrast
⭐
8
MetaCRAST: reference-guided CRISPR detection in metagenomes
Plethora
⭐
8
Copy number estimation of highly duplicated sequences
Tabsat
⭐
8
Targeted Amplicon Bisulfite Sequencing Analysis Tool
Scripts
⭐
8
backup for my server
Hicres
⭐
7
Estimating and predicting HiC library resolution
Auto_barcode
⭐
7
Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files
Seqfilter
⭐
7
Versatile FASTA/FASTQ sequence file analysis and modification tool
Umiscripts
⭐
6
Simple scripts for handling Unique Molecular Indexes in Fastq and Bam files
Fastqsifter
⭐
6
Separate contaminating reads from FASTQ files (e.g., mitochondria, symbionts, bacterial or human contaminants)
Gfusion
⭐
6
GFusion is a software package to detect fusion genes using RNA-Seq data
Mario
⭐
6
Measurement of Allelic Ratio Informatics Operator (MARIO) pipeline
Circrna
⭐
6
Nextflow pipeline to scan high throughput sequencing data for circRNAs, perform differential expression and generate circRNA-miRNA targets
Withncbi
⭐
6
egaz and alignDB work with external (NCBI/EBI) data
Scitools
⭐
5
General functions for analyzing combinatorial indexing sequence data
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1-37 of 37 search results
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