Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Zumis | 232 | a year ago | 7 | gpl-3.0 | R | |||||
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs | ||||||||||
Mpraflow | 27 | 3 months ago | 11 | apache-2.0 | Python | |||||
A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data | ||||||||||
Icshape | 14 | 9 years ago | 3 | Perl | ||||||
icSHAPE pipeline | ||||||||||
Proseq2.0 | 14 | 10 months ago | 5 | bsd-2-clause | Shell | |||||
Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing | ||||||||||
Miseq 16s Pipeline | 11 | 9 years ago | mit | Python | ||||||
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq | ||||||||||
Baseqdrops | 11 | 5 years ago | Python | |||||||
A versatile and lightning fast package for processing 10X, inDrop and Drop-seq data. | ||||||||||
Larry | 10 | a year ago | Jupyter Notebook | |||||||
Dropseqrunner | 10 | 4 years ago | Python | |||||||
Lightweight pipeline for processing droplet-based single-cell RNA-seq data | ||||||||||
Arks | 9 | 4 years ago | C++ | |||||||
🌈Alignment-free scaffolding of genome assemblies with 10x Genomics Chromium reads | ||||||||||
Miseq_bin | 8 | a year ago | 2 | lgpl-3.0 | HTML | |||||
Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes |