Trimgalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Fastp | 1,602 | 6 months ago | 1 | December 15, 2021 | 309 | mit | C++ | |||
| An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) | ||||||||||
| Trimgalore | 382 | 10 months ago | 2 | December 29, 2020 | 9 | gpl-3.0 | Perl | |||
| A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data | ||||||||||
| Crispresso2 | 233 | 3 months ago | 24 | other | Python | |||||
| Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments | ||||||||||
| Atropos | 116 | 4 months ago | 25 | other | Python | |||||
| An NGS read trimming tool that is specific, sensitive, and speedy. (production) | ||||||||||
| Seqprep | 109 | 8 years ago | 24 | mit | C | |||||
| Tool for stripping adaptors and/or merging paired reads with overlap into single reads. | ||||||||||
| Adapterremoval | 87 | 10 months ago | 9 | gpl-3.0 | C++ | |||||
| AdapterRemoval v2 - rapid adapter trimming, identification, and read merging | ||||||||||
| Scythe | 79 | 6 years ago | 15 | mit | C | |||||
| A 3'-end adapter contaminant trimmer | ||||||||||
| Skewer | 70 | 8 years ago | 34 | mit | C++ | |||||
| Nxtrim | 50 | 6 years ago | 3 | other | C++ | |||||
| Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries. | ||||||||||
| Ktrim | 30 | 6 months ago | 5 | C++ | ||||||
| Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data | ||||||||||
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