Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Fastp | 1,602 | 6 months ago | 1 | December 15, 2021 | 309 | mit | C++ | |||
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) | ||||||||||
Cutadapt | 475 | 64 | 24 | 3 months ago | 64 | December 06, 2023 | 59 | mit | Python | |
Cutadapt removes adapter sequences from sequencing reads | ||||||||||
Crispresso2 | 233 | 3 months ago | 24 | other | Python | |||||
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments | ||||||||||
Skewer | 70 | 8 years ago | 34 | mit | C++ | |||||
Flexbar | 59 | 4 years ago | 5 | bsd-3-clause | C++ | |||||
flexible barcode and adapter removal | ||||||||||
Poreplex | 51 | 4 years ago | 7 | October 18, 2019 | 11 | other | Python | |||
A versatile sequenced read processor for nanopore direct RNA sequencing | ||||||||||
Migec | 40 | 10 months ago | 28 | other | Groovy | |||||
A RepSeq processing swiss-knife | ||||||||||
Ktrim | 30 | 6 months ago | 5 | C++ | ||||||
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data | ||||||||||
Peat | 20 | 3 years ago | 5 | gpl-2.0 | C++ | |||||
An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences. | ||||||||||
Seqbuster | 10 | 5 years ago | 8 | Java | ||||||
pipeline for the analysis of small RNA data |