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Seqprep

Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
Stars
109
License
mit
Open Issues
24
Most Recent Commit
8 years ago
Programming Language
C
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Repo
Alternatives To Seqprep
Project NameStarsDownloadsRepos Using ThisPackages Using ThisMost Recent CommitTotal ReleasesLatest ReleaseOpen IssuesLicenseLanguage
Fastp1,602
6 months ago1December 15, 2021309mitC++
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Trimgalore382
10 months ago2December 29, 20209gpl-3.0Perl
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Crispresso2233
3 months ago24otherPython
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
Atropos116
4 months ago25otherPython
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
Seqprep109
8 years ago24mitC
Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
Adapterremoval87
10 months ago9gpl-3.0C++
AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
Scythe79
6 years ago15mitC
A 3'-end adapter contaminant trimmer
Skewer70
8 years ago34mitC++
Nxtrim50
6 years ago3otherC++
Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
Ktrim30
6 months ago5C++
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
Alternatives To Seqprep
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Skewer ⭐ 70
most recent commit 8 years ago


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Alternative Project Comparisons
Seqprep vs Fastp
Seqprep vs Trimgalore
Seqprep vs Crispresso2
Seqprep vs Atropos
Seqprep vs Adapterremoval
Seqprep vs Scythe
Seqprep vs Skewer
Seqprep vs Nxtrim
Seqprep vs Ktrim
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