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Search results for nextflow sars cov 2

6 search results found

Viralrecon ⭐ 101

Assembly and intrahost/low-frequency variant calling for viral samples

SARS-CoV-2 workflow for nanopore sequence data

Reference-based consensus creation

compare sequences to a shared root reference sequence.

Covigator Ngs Pipeline ⭐ 15

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

Nf Ncov Voc ⭐ 5

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

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