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Search results for python nextflow
nextflow
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python
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26 search results found
Tools
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205
Python package with helper tools for the nf-core community.
Emg Viral Pipeline
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98
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
Pytest Workflow
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52
Configure workflow/pipeline tests using yaml files.
Nextflow.py
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46
Python wrapper around Nextflow.
Openproblems V2
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31
Formalizing and benchmarking open problems in single-cell genomics
Long Read Proteogenomics
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26
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
Spew
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19
Automatic Packaging and Distribution of Bioinformatics Pipelines
Sublime Nextflow
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19
Nextflow workflow syntax highlighting and snippets for Sublime Text 4
Circdna
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18
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
Micone
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15
The Microbial Co-occurrence Network Explorer
Hyperopt
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12
Nextflow pipeline for hyperparameter optimization of machine learning models
Arete
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12
AMR/VF LGT focused bacterial genomics analysis workflow
Machine_learning_determinism_evaluation
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11
GPU deterministic machine learning with Nextflow
Imcyto
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11
Image Mass Cytometry analysis pipeline
Lodestone
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11
Mycobacterial pipeline
Monsda
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10
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
Batchconvert
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10
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
Tostadas
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10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Viralintegration
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9
Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.
Sparced
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8
SPARCED model creation and simulation package.
Marvel
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7
Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape
Configbuilder Nf
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6
Nextflow config builder scripts for supported HPC infrastructures.
Metapep
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6
From metagenomes to epitopes and beyond
Lg Pact
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6
NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.
Nf Ncov Voc
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5
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
Ansible Slurm Climb
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5
Ansible playbook for installing SLURM based cluster on CLIMB (Cloud Infrastructure for Microbial Bioinformatics)
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1-26 of 26 search results
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