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Search results for docker nextflow
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34 search results found
Nextflow
⭐
2,447
A DSL for data-driven computational pipelines
Sarek
⭐
126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Dockstore
⭐
113
Our VM/Docker sharing infrastructure and management component
Bacannot
⭐
85
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
Master_of_pores
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77
Nextflow pipeline for analysis of direct RNA Nanopore reads
Nanoclust
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59
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
Yamp
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52
YAMP: Yet Another Metagenomic Pipeline
Needlestack
⭐
39
Multi-sample somatic variant caller
Nf Hack17 Tutorial
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31
Nextflow basic tutorial for newbie users
Rnatoy
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24
A proof of concept RNA-Seq pipeline with Nextflow
Wave
⭐
23
On-demand containers provisioning service
Mop2
⭐
20
Master of Pores 2
Porefile
⭐
19
A Nextflow full-length 16S profiling pipeline for ONT reads
Maliampi
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19
Maximum Likelihood Amplicon Pipeline
Spew
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19
Automatic Packaging and Distribution of Bioinformatics Pipelines
Cookiecutter
⭐
18
DEPRECIATED! Please use nf-core/tools instead
Gatk4_best_practice
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18
GATK4 Best Practice Nextflow Pipeline
Crg Course Nov16
⭐
17
Nextflow + Docker tutorial material
Docker Benchmarks
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17
A benchmarks of genomic pipelines running in Docker containers
Wave Showcase
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16
Examples showing how to configure Nextflow to run with Wave containers provisioning service
Grandeur
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13
UPHL's Reference Free Pipeline
Tostadas
⭐
10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Nf Whisper
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9
Proof-of-concept Nextflow pipeline to interact with OpenAI Whisper
Flowbio
⭐
9
A fast, easy way to present complex bioinformatics pipelines to biologists
Sparced
⭐
8
SPARCED model creation and simulation package.
Phylonext
⭐
7
A pipeline for phylogenetic diversity analysis of GBIF-mediated data
Ngs580 Nf
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7
Target exome sequencing analysis for NYU NGS580 gene panel
Kube Runner
⭐
6
A tool for running bioinformatics workflows on a Kubernetes cluster
Bug Flow
⭐
5
Nextflow Course 2018
⭐
5
IARC nextflow course for pipeline users
Docking Validation
⭐
5
Validation studies for docking related studies
Nf Repeatmasking
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5
Nextflow workflow for automatic repeat detection, classification and masking
Nextflow Scif
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5
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
Rump
⭐
5
A Reproducible Untargeted Metabolomics Data Processing Pipeline
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1-34 of 34 search results
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