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Search results for neuroscience microscopy

11 search results found

Cellfinder ⭐ 170

Automated 3D cell detection in very large images

Pytorch_connectomics ⭐ 151

PyTorch Connectomics: segmentation toolbox for EM connectomics

Brainreg ⭐ 103

Automated 3D brain registration with support for multiple species and atlases.

Bg Atlasapi ⭐ 97

A lightweight python module to interact with atlases for systems neuroscience

Stitchit ⭐ 16

Stitching of large tiled datasets

Exllsm Circuit Reconstruction ⭐ 12

Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

Vvdviewer ⭐ 11

3D/4D volumetric rendering of microscopy data

Brainreg Napari ⭐ 11

Automated 3D brain registration in napari with support for multiple species and atlases.

Visualisation and analysis of brain imaging data

Bakingtray ⭐ 6

Serial-section automated anatomy extension for ScanImage

Ara_tools ⭐ 6

Analysis of mouse brain STP data with respect to the Allen Reference Atlas

Related Searches

Python Neuroscience (372)

Jupyter Notebook Neuroscience (191)

Matlab Neuroscience (158)

1-11 of 11 search results

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