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Course Content ⭐ 2,527

NMA Computational Neuroscience course

Precourse ⭐ 587

A repo for the pre-course work at home exercises

A Software Framework for Neuromorphic Computing

Suite2p ⭐ 306

cell detection in calcium imaging recordings

Org.geppetto ⭐ 184

Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

Deepeeg ⭐ 180

Deep Learning with Tensor Flow for EEG MNE Epoch Objects

Artificial Intelligence And Machine Learning ⭐ 135

A repository for implementation of artificial intelligence algorithm which includes machine learning and deep learning algorithm as well as classical AI search algorithm

Regularized Linear Autoencoders ⭐ 132

Loss Landscapes of Regularized Linear Autoencoders

Analyzing_neural_time_series ⭐ 124

python implementations of Analyzing Neural Time Series Textbook

Nsci801 Quantneuro ⭐ 112

NSCI 801 (Queen's U) Quantitative Neuroscience course materials

Nn Brain ⭐ 102

Tutorial codes for modeling brains with neural nets

🕝 Time-warped principal components analysis (twPCA)

Bg Atlasapi ⭐ 97

A lightweight python module to interact with atlases for systems neuroscience

Nupic.research ⭐ 94

Experimental algorithms. Unsupported.

Tvb Root ⭐ 91

Main TVB codebase

Neuroscience_tutorials ⭐ 90

Some tutorials for students of neuroscience

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

Labhacks ⭐ 68

Resources for data driven neuroscientists.

Xcorr Notebooks ⭐ 67

An ongoing collection of ipython notebooks on neuroscience from xcorr: computational neuroscience.

Computational Neuroscience Uw ⭐ 61

Python scripts that supplement the Coursera Computational Neuroscience course by the University of Washington

Pymindaffectbci ⭐ 55

Python SDK for high performance on-line Brain Computer Interface development.

Alphatracker ⭐ 52

AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and produces reliable tracking of multiple unmarked animals. An easy-to-use user interface further enables manual inspection and curation of results.

Datasciencepsychneuro ⭐ 50

Repository for the Data Science for Psychology and Neuroscience course at CMU (Verstynen)

Spyglass ⭐ 50

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

Code to analyse structural covariance brain networks using python.

Nn Decoding ⭐ 40

Brain decoding/encoding with neural network language models

Itktubetk ⭐ 39

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

Python In Neuroscience Tutorials ⭐ 38

Collection of tutorials about methods of computational neuroscience using Python

Basic Introduction To Python ⭐ 34

Introduction to Mathematics and Python using Neuroscience Examples

Lfads Torch ⭐ 34

A PyTorch implementation of Latent Factor Analysis via Dynamical Systems (LFADS) and AutoLFADS.

Mooc Neurons And Synapses 2017 ⭐ 33

Reference data for the "Simulation Neuroscience:Neurons and Synapses" Massive Online Open Course

Erpscanr ⭐ 32

Automated meta-analysis of event-related potential (ERP) research.

Neuronunit ⭐ 32

A package for data-driven validation of neuron and ion channel models using SciUnit

Neuro_data_science ⭐ 31

An open course in neural data science

Loggabor ⭐ 30

A python implementation for a LogGabor filtering and pyramid representation

Neuromatch Academy ⭐ 30

Preparatory Materials, Self-guided Learning, and Project Management for Neuromatch Academy activities

Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)

Paper Encoding_decoding_electrophysiology ⭐ 28

A repository for tutorials to supplement the encoding model methods paper

Appliedstatisticsforneuroscience ⭐ 26

Materials for UC Berkeley Neuroscience 299

Oscillationmethods ⭐ 25

Methodological considerations for analyzing and interpreting neural oscillations.

Cncc 2019 ⭐ 24

Computational Neuroscience Crash Course (CNCC 2019)

Mind_2017 ⭐ 24

Materials for Methods in Neuroscience at Dartmouth (MIND) 2017 Summer School on Network Dynamics

Python_neurobootcamp ⭐ 23

Cncc 2020 ⭐ 20

Computational Neuroscience Crash Course (University of Bordeaux, 2020)

Dynamic Time Warping in Python / C (using ctypes)

Visual_behavior_analysis ⭐ 20

Python package for analyzing behavioral data for Brain Observatory: Visual Behavior

Neuroevolutionmarkettrader ⭐ 19

Neuro evolution agent to buy and sell stocks atumatically

Nwb_hackathons ⭐ 19

Repository for collecting materials from nwb hackathons

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

Open Visual Stimulator ⭐ 16

An arbitrary-spectrum spatial visual stimulator for vision research

Python implementation of the Leabra framework

Map_fosh_demand ⭐ 15

Using online surveys to ask researchers/Bio DIYers/citzen scientists what are their science equipment needs

Multirat ⭐ 14

A Rat fMRI multi-center study

An Introduction to Programming for Psychologists & Neuroscientists Course at Dartmouth PBS

Neural Dynamics Gyration ⭐ 14

A repository containing the code accompanying the research paper "On the Rotational Structure in Neural Data" by Kuzmina E., Kriukov D., Lebedev M.

Getyourbraintogether ⭐ 12

Get Your Brain Together Neuroimage Registration Workshops and Hackathons

Introduction to computational neuroscience workshop

BEIRA: BOLD from EEG Interpretable Regression Autoencoder. Prediction subcortical BOLD activity from EEG data

Datadrivencognitiveontology ⭐ 11

Pylossless ⭐ 11

🧠 EEG Processing pipeline that annotates continuous data

Machine Learning for Neuroscience Module (https://www.imperial.ac.uk/study/courses/postgrad

Birdbrain ⭐ 11

A library for viewing songbird brain atlases (European starling, Canary, Zebra finch, Pigeon, Mustached bat)

HoloViz+Bokeh for Neuroscience

Documentation ⭐ 10

Source repository for NeuroML documentation.

An updated version of the Open Source Brain platform

Meg Group Decode ⭐ 10

Train Wavenet-based group-level models on MEG data, and uncover neuroscientifically interpretable information.

Neu 365p 385l Spring 2021 ⭐ 10

Comp Neurosci ⭐ 10

Problem sets and materials for systems and computational neuroscience course

Ucsf Data_driven_neuro ⭐ 10

A repository to store course materials for the data-driven neuroscience in python short-course.

Analyse_opmeg ⭐ 9

Nic & Rob's lair of scripts to analyse OPM data, using the Fieldtrip toolbox

Professional Workshop 3 ⭐ 9

上海交通大学致远数学方向专业研讨课3 [计算神经科学专题]

Eeg Chaos Kuramoto Neural Net ⭐ 8

EEG prediction using Chaos Theory, Dynamical Systems Theory, and neural networks

Gridcells ⭐ 8

Implementation of grid cells in Python and Javascript

Scanningthehorizon ⭐ 7

Code and data for "Scanning the Horizon..." review in Nature Reviews Neuroscience

Stalefish ⭐ 7

Spatial Analysis of ISH Brain Slice Data

Brain Computer Interface Cybathlon2020 ⭐ 7

Master thesis subject: Leveraging Deep Learning for Real-time EEG Classification at Cybathlon's BCI-race

Bayesian Visual Working Memory ⭐ 7

Bayesian Visual Working Memory in Python.

Get Articles Meaning ⭐ 6

Getting meaning out of scientific articles using nltk/gensim and scikit-learn

Onboarding ⭐ 6

Resources and activities for new NBC lab members. Inspired by the Whitaker lab's great Onboarding repo.

Neuromatchacademy ⭐ 6

Repo containing computational neuroscience notebooks and a project detecting latent states in neural activity using Hidden Markov Models on spiking data, made during the Neuromatch Academy 2020.

Textbook Public ⭐ 6

Python for Neuroscientists course textbook

Python module to use the annotations created with NeuroCurator, for example in a Jupyter notebook.

Predictive Coding ⭐ 6

Research of a deep predictive coding model for unsupervised representation learning from video and audio data.

Neurosynth Mfc ⭐ 6

Code, data, and results for De La Vega, Chang, Banich, Wager & Yarkoni. Journal of Neuroscience (2016).

Example Analyses ⭐ 5

Example analyses making extensive use of nelpy.

Appliedmldays_2018 ⭐ 5

Discovering Brain Structure with Machine Learning

Human Brain Rat ⭐ 5

Bio-Silicon Synergetic Intelligence System

Jupyter Book of quantitative T1 MRI http://qmrlab.org/t1_book/

Iblviewer ⭐ 5

Interactive visualization tool for multiple volumes, meshes and points based on VTK. The app can be controlled with Python scripts (optionally headless), with a Qt UI & dynamic statistics or with Jupyter.

group sequential tests for neuroimaging

Neuromatch Project ⭐ 5

Team Radnitz-Moniz Conjecture

Analysis code for "The neural representation of personally familiar and unfamiliar faces in the distributed system for face perception" by Visconti di Oleggio Castello, Halchenko, et al., 2017, Scientific Reports

Holomorphic_eqprop ⭐ 5

Repository to reproduce the results of the paper "Holomorphic Equilibrium Propagation Computes Exact Gradients Through Finite Size Oscillations"

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