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Search results for metagenomics taxonomic classification
metagenomics
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taxonomic-classification
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11 search results found
Atlas
⭐
332
ATLAS - Three commands to start analyzing your metagenome data
Kaiju
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236
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Kmcp
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161
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
Ampliseq
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141
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Taxprofiler
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78
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Sylph
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74
ultrafast genome querying and taxonomic profiling for metagenomic shotgun samples by abundance-corrected minhash.
Metabuli
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54
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Kraken Biom
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33
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
Taxpasta
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21
TAXnomic Profile Aggregation and STAndardisation
Metscale
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16
MetScale: snakemake workflows to scale metagenome analyses
Taxor
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13
Fast and space-efficient taxonomic classification of long reads
Pewo
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10
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
Rappas
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9
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
Megapath
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5
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
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1-11 of 11 search results
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