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Search results for hi c chromatin

9 search results found

Hic_tools ⭐ 454

A collection of tools for Hi-C data analysis

Hic_data ⭐ 128

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

C.origami ⭐ 47

C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.

dcHiC: Differential compartment analysis for Hi-C datasets

Hicpeaks ⭐ 36

A Python implementation for BH-FDR and HiCCUPS

Polychrom ⭐ 35

Polymer simulations of chromosomes and generating "in silico" Hi-C maps

Comparison of Hi-C Experiments using Structural Similarity.

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

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1-9 of 9 search results

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