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Search results for interaction hi c

6 search results found

Hic_data ⭐ 128

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

Coolpuppy ⭐ 66

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

Hiccompare ⭐ 11

Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices

Visual exploration of large genome interaction matrices with interactive small multiples.

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