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Search results for chromatin
chromatin
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19 search results found
Hic_tools
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454
A collection of tools for Hi-C data analysis
Hic_data
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128
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
Tadbit
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89
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Atacseq
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64
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Cut Runtools 2.0
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62
CUT&RUN and CUT&Tag data processing and analysis
C.origami
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47
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
Dchic
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44
dcHiC: Differential compartment analysis for Hi-C datasets
Epilogos
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37
Methods for summarizing and visualizing multi-biosample functional genomic annotations
Hicpeaks
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36
A Python implementation for BH-FDR and HiCCUPS
Polychrom
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35
Polymer simulations of chromosomes and generating "in silico" Hi-C maps
Tadkit
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27
3D Genome Browser
Chess
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24
Comparison of Hi-C Experiments using Structural Similarity.
Tadlib
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23
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
Pumatac
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16
Pipeline for Universal Mapping of ATAC-seq
Genome Blender
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13
Scripts to create cartoons of 3D genomes
Gamtools
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8
Processing, quality control and analysis of GAM datsets
Aqua Hichip
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8
Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
Multirepmacschipseq
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7
Multiple-replica multiple-condition Macs2 ChIPSeq wrapper
Chromatinimaging
⭐
7
Super-resolution chromatin tracing 2018
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1-19 of 19 search results
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