Genome Blender
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Hic_data | 128 | 6 months ago | mit | |||||||
| A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates. | ||||||||||
| Tadbit | 89 | a year ago | 58 | gpl-3.0 | Python | |||||
| TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models | ||||||||||
| Hic Data Analysis Bootcamp | 78 | 6 years ago | 1 | mit | Jupyter Notebook | |||||
| Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data. | ||||||||||
| 3d Genome Processing Tutorial | 28 | 7 years ago | mit | Jupyter Notebook | ||||||
| A 3D genome data processing tutorial for ISMB/ECCB 2017 | ||||||||||
| Tadkit | 27 | 2 years ago | 31 | mit | JavaScript | |||||
| 3D Genome Browser | ||||||||||
| Bioweb3d | 19 | 4 years ago | afl-3.0 | TeX | ||||||
| Bio3D an HTML5 visualization tool for biological datasets | ||||||||||
| 3dna | 17 | 9 years ago | 4 | OpenSCAD | ||||||
| Generate a printable 3D model from your genome | ||||||||||
| Genomeflow | 16 | 5 years ago | 1 | Java | ||||||
| GenomeFlow: A Graphical Tool for Modeling and Analyzing 3D Genome Structure | ||||||||||
| Stripenn | 13 | 9 months ago | 1 | mit | Python | |||||
| Architectural stripe detection from 3D genome conformation data | ||||||||||
| Genome Blender | 13 | 7 months ago | mit | Python | ||||||
| Scripts to create cartoons of 3D genomes | ||||||||||
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