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Search results for genomics illumina

14 search results found

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Genomics ⭐ 154

A collection of scripts and notes related to genomics and bioinformatics

Viral Ngs ⭐ 129

Viral genomics analysis pipelines

Command line utility for manipulating Illumina-generated FASTQ files.

ClairS - a deep-learning method for long-read somatic small variant calling

Awesome Sequencing Tech Papers ⭐ 26

A collection of publications on comparison of high-throughput sequencing technologies.

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

Rnaseq Pipeline ⭐ 18

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Human_genomics_pipeline ⭐ 15

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

A straightforward and complete next-generation sequencing read simulator

Grandeur ⭐ 13

UPHL's Reference Free Pipeline

Automated Tool for Global Screening Array analysis

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