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Search results for deep learning genomics
deep-learning
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genomics
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43 search results found
Deepvariant
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2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Deeplearning Biology
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1,846
A list of deep learning implementations in biology
Deep Review
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1,186
A collaboratively written review paper on deep learning, genomics, and precision medicine
Healthcare_ml
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426
A curated list of ML|NLP resources for healthcare.
Enformer Pytorch
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359
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
Nucleotide Transformer
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305
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Dna Diffusion
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297
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
Dragonn
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245
A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
Janggu
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205
Deep learning infrastructure for genomics
Deep Rules
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198
Ten Quick Tips for Deep Learning in Biology
Clair3
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191
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Deep Learning Genomics Primer
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137
Contains files for the deep learning in genomics primer.
Neusomatic
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124
NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
Ohmnet
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75
OhmNet: Representation learning in multi-layer graphs
Machine Learning Resource
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60
Awesome Structural Bioinformatics
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54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
Scvae
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52
Deep learning for single-cell transcript counts
Genomic_benchmarks
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52
Benchmarks for classification of genomic sequences
Dna Nn
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51
Model and predict short DNA sequence features with neural networks
Flash Genomics Model
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49
My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other hierarchical methods)
C.origami
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47
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
Deep Neural Networks Healthcare
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46
Tangible and Practical Deep Learning Projects Repository for Healthcare such as Cancer, Drug Discovery, Genomic and More
Deepsomatic
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45
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
Eugene
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44
Elucidating the Utility of Genomic Elements with Neural Nets
Clairs
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42
ClairS - a deep-learning method for long-read somatic small variant calling
Amber
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39
Automated Modelling for Biological Evidence-based Research
Variantworks
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38
Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
Deepmotif
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34
Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications
Deep Proteomics
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33
Chromdragonn
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29
Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"
Chromoformer
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24
The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
Deepg
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24
DeepG, or 'Deep Genomics', is a R library which allows to train and apply deep neural networks on genomic datasets
Clairs To
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18
ClairS-TO - a deep-learning method for tumor-only somatic SNV calling
Mural
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15
MuRaL is a deep learning framework for estimating single-nucleotide mutation rates across the genome.
Awesome List Machine Learning Healthcare
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13
A list of awesome resources on the application of machine learning in healthcare
Mimsi
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12
Microsatellite Instability Classification using Multiple Instance Learning
Clair3 Trio
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12
Clair3-Trio: variant calling in trio using Nanopore long-reads
Genomics
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10
Deep learning in genomics
Spacepile
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10
convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
Jarvis
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9
JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
Fourier_attribution_priors
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8
An attribution prior for deep learning based on Fourier transforms
Gcgc
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8
An ML-feature processing library for biological sequences.
Deepbio
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8
This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to biomedicine. Feel free to make a pull request to contribute to this list.
D N N_health Care
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7
Nvtk
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6
NvTK (NvwaToolKit), is a systemmatic and easy-using deep learning software in single-cell genomics.
Mamnet
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6
MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.
Genomap
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5
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
Deep Learning For Genomics
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5
Using deep learning methods on single-cell sequencing data for classification of cell types
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1-43 of 43 search results
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