Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Deepvariant	2,978			5 months ago			8	bsd-3-clause	Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Nucleotide Transformer	305			3 months ago			12	other	Python
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Janggu	205			3 years ago	19	August 04, 2020		gpl-3.0	Jupyter Notebook
Deep learning infrastructure for genomics
Deepcpg	108			5 years ago	8	December 03, 2018	11	mit	Python
Deep neural networks for predicting CpG methylation
Deepmod	86			a year ago			20	other	Python
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
Act	59			7 years ago				gpl-3.0	Java
Computational synthetic biology: Predicting DNA edits for bioengineering
Dna Nn	51			5 years ago			1		C
Model and predict short DNA sequence features with neural networks
Deepsomatic	45			6 months ago				bsd-3-clause
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
Dfim	44			5 years ago			3		Python
Deep Feature Interaction Maps (DFIM)
Genomelake	37	1	1	4 years ago	4	April 14, 2018	4	bsd-3-clause	Python
Simple and efficient access to genomic data for deep learning models.

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Deepvariant ⭐ 2,978

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

most recent commit 5 months ago

Nucleotide Transformer ⭐ 305

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

most recent commit 3 months ago

Janggu ⭐ 205

Deep learning infrastructure for genomics

total releases 19most recent commit 3 years ago

Deepcpg ⭐ 108

Deep neural networks for predicting CpG methylation

total releases 8most recent commit 5 years ago

Deepmod ⭐ 86

DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

most recent commit a year ago

Act ⭐ 59

Computational synthetic biology: Predicting DNA edits for bioengineering

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Dna Nn ⭐ 51

Model and predict short DNA sequence features with neural networks

most recent commit 5 years ago

Deepsomatic ⭐ 45

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

most recent commit 6 months ago

Dfim ⭐ 44

Deep Feature Interaction Maps (DFIM)

most recent commit 5 years ago

Genomelake ⭐ 37

Simple and efficient access to genomic data for deep learning models.

dependent packages 1total releases 4most recent commit 4 years ago

Suggest An Alternative To dna-nn

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Dna Nn vs Deepvariant

Dna Nn vs Nucleotide Transformer

Dna Nn vs Deepsomatic

Dna Nn vs Dfim

Dna Nn vs Genomelake

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