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Search results for genomics fastq
fastq
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genomics
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32 search results found
Bwa Mem2
⭐
645
The next version of bwa-mem
Juicer
⭐
313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Genomics
⭐
154
A collection of scripts and notes related to genomics and bioinformatics
Genozip
⭐
144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Ngless
⭐
141
NGLess: NGS with less work
Viral Ngs
⭐
129
Viral genomics analysis pipelines
Seqfu2
⭐
96
🚀 seqfu - Sequece Fastx Utilities
Assembly Stats
⭐
92
Get assembly statistics from FASTA and FASTQ files
Cljam
⭐
87
A DNA Sequence Alignment/Map (SAM) library for Clojure
Fqgrep
⭐
75
Grep for FASTQ files
Fq
⭐
54
Command line utility for manipulating Illumina-generated FASTQ files.
Rattle
⭐
51
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Dna Nn
⭐
51
Model and predict short DNA sequence features with neural networks
Fastaq
⭐
45
Python3 scripts to manipulate FASTA and FASTQ files
Assembly_improvement
⭐
39
Improve the quality of a denovo assembly by scaffolding and gap filling
Rna Seq_notes
⭐
29
A continually expanding collection of RNA-seq tools
Mapache
⭐
23
mapping pipeline for ancient DNA
Iliad
⭐
21
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
Lariat
⭐
21
Linked-Read Alignment Tool
Tiptoft
⭐
20
Predict plasmids from uncorrected long read data
10x_snakepipe
⭐
17
A snakemake pipeline for 10X genomics cellranger
Bio Tradis
⭐
15
A set of tools to analyse the output from TraDIS analyses
Sixess
⭐
14
🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files
Chia Pet_tool_v3
⭐
13
ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster and visulization
Harc
⭐
12
Fastq compression
Sequence Database Curator
⭐
10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Readdatastores.jl
⭐
10
Datastores for reads, not your papa's FASTQ files.
Bioio
⭐
9
Lightweight C++ library for reading FASTA and FASTQ files.
Snakemake_rnaseq
⭐
8
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
Plethora
⭐
8
Copy number estimation of highly duplicated sequences
Gps Pipeline
⭐
6
Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)
Trust4_manuscript_evaluation
⭐
5
TRUST4 manuscript evaluation
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1-32 of 32 search results
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