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Search results for genome matrices
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7 search results found
Sigprofilermatrixgenerator
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91
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
Tadbit
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89
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Sigprofilermatrixgeneratorr
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17
R wrapper for utilizing the SigProfilerMatrixGenerator framework
Snaptools
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11
A module for working with snap files in Python
Dropseqrunner
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10
Lightweight pipeline for processing droplet-based single-cell RNA-seq data
Hipiler
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10
Visual exploration of large genome interaction matrices with interactive small multiples.
Dot2dot
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7
Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery
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