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Search results for fastq trimming
fastq
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trimming
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17 search results found
Fastp
⭐
1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
Trimgalore
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382
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Sickle
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166
Windowed Adaptive Trimming for fastq files using quality
Afterqc
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157
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Adapterremoval
⭐
87
AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
Mutmap
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40
MutMap pipeline to identify causative mutations responsible for a phenotype
Qtl Seq
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39
QTL-seq pipeline to identify causative mutations responsible for a phenotype
Figaro
⭐
24
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
Sinvict
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22
SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
Peat
⭐
20
An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
Rnaseq Nf
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20
RNAseq analysis pipeline
Ggr Cwl
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19
CWL tools and workflows for GGR
Shi7
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17
Auto-parameterizing QC Pipeline for Illumina sequencing runs
Fastprongs
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9
A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.
Itsxpress
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6
Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis
Fastqcleaner
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6
A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files
Ngs_pipelines
⭐
5
Nextflow-based pipelines for typical NGS processing tasks
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