Shi7
Auto-parameterizing QC Pipeline for Illumina sequencing runs
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Rnaseq Nf | 20 | 2 years ago | 4 | gpl-3.0 | HTML | |||||
| RNAseq analysis pipeline | ||||||||||
| Shi7 | 17 | 7 months ago | 9 | agpl-3.0 | Python | |||||
| Auto-parameterizing QC Pipeline for Illumina sequencing runs | ||||||||||
| Dada2_guidelines | 8 | 3 months ago | R | |||||||
| A repository with a general dada2 pipeline for amplicon processing | ||||||||||
| Tag Seq | 6 | 3 years ago | R | |||||||
| 3’ Tag RNA-seq pipeline (Work in progress) | ||||||||||
| Bcdatabaser | 6 | 2 years ago | 11 | mit | Perl | |||||
| A pipeline to create reference databases for arbitrary markers and taxonomic groups from NCBI data | ||||||||||
| Ngs_pipelines | 5 | 9 years ago | bsd-3-clause | Groovy | ||||||
| Nextflow-based pipelines for typical NGS processing tasks | ||||||||||
| Cageseq | 5 | 3 years ago | 3 | mit | Nextflow | |||||
| CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags. | ||||||||||
| Distillerycats | 5 | 3 years ago | 11 | other | Python | |||||
| Find disease associations across metagenomes with k-mers using sourmash, and then recover pangenomic accessory elements using spacegraphcats. | ||||||||||
| Working_with_dna_meth | 5 | 4 years ago | gpl-3.0 | Python | ||||||
| Pipeline that I use to process DNA methylation data--both theory and implementation included! | ||||||||||
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