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55 search results found

Containers ⭐ 621

Bioinformatics containers

Youtubetutorials ⭐ 180

Gcp For Bioinformatics ⭐ 178

GCP for Bioinformatics Researchers

Rnalysis ⭐ 114

RNA sequencing analysis software

Iskylims ⭐ 61

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Palimpsest ⭐ 56

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

Awesome Structural Bioinformatics ⭐ 54

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

Bioinstaller ⭐ 50

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

BioContainers specifications

Webservice Clients ⭐ 43

A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.

Phigaro is a scalable command-line tool for predicting phages and prophages

Bystro genetic analysis (annotation, filtering, statistics)

Nam Genomes ⭐ 34

Detailed bioinformatics scripts and methods used in the NAM genome paper.

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

GREIN : GEO RNA-seq Experiments Interactive Navigator

Genomegraphs.jl ⭐ 29

A modern genomics framework for julia

High-throughput gene to knowledge mapping through massive integration of public sequencing data.

Fastenloc ⭐ 28

Colocalization analysis of genetic association signals

Multi Plier ⭐ 27

An unsupervised transfer learning approach for rare disease transcriptomics

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Cgpbigwig ⭐ 22

BigWig manpulation tools using libBigWig and htslib

Sequencework ⭐ 22

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Grupo Estudo Bioinformatica ⭐ 22

Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.

Reactomepy ⭐ 19

Explore biomolecular pathways in Reactome from the command-line or a Python script

Team Rosalind Project ⭐ 18

This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Galaksio ⭐ 17

An easy-to-use way for running Galaxy workflows.

Pbxplore ⭐ 17

A suite of tools to explore protein structures with Protein Blocks 🐍

Pipernaseq ⭐ 16

A comprehensive pipeline for RNAseq data analysis

Snakemake Wrappers ⭐ 14

🐍 Snakemake wrappers for bioinformatics.

A python project for analysis of codon usage for gene or genome analysis

Manuscript describing ChronQC is now available online in Bioinformatics

Workflows ⭐ 12

CWL based Bioinformatics Workflows

pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to characterize the differences among groups of large datasets

PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a smart query system which fits the computing resources to optimize the query speed.

Yolo2 Keras ⭐ 11

detecting Red Blood Cell with yolov2

This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid-19 with a contribution of GBP 20 million (https://www.gov.uk/government/news/uk-launches-wh genome-sequence-alliance-to-map-spread-of-coronavi

Iscandar ⭐ 10

Interactive reporting tool for single cell RNA-seq data.

Webservice Cwl ⭐ 10

Programmatic access to various data resources and analysis EBI tools via CWL

NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization

Positive Selection ⭐ 10

Scripts and procedures for detecting positively selected genes and codons in primates

Protein Feature Extraction ⭐ 10

Python code to extract features from Protein sequences for Machine Learning/Deep Learning

Bioinformatics ⭐ 10

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

Python Library for data analysis based on GMQL

CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential markers of rare cell types looking at genes whose expression is confined in small regions of the expression space

Searching for Horizontal Gene Transfer

Omicsbioanalytics ⭐ 7

Omics BioAnalytics - RShiny web app for bioinformatics analyses

Reproducible Research Guidelines ⭐ 6

Guidelines for accountable and reproducible computational research

Blast Binder ⭐ 6

Repo for running command line-based BLAST in Jupyter environment provided via Binder.

Genome Browser ⭐ 6

Genome browser to visualize and analyze genomic data

Ciara_python ⭐ 6

Implementation of entropy of mixing algorithm in python

Quality control plotting for long reads

Consensx.itk.ppke.hu ⭐ 5

CoNSEnsX - Complience of NMR-derived Structural Ensembles with Experimental Data

Coxlab_bug_reporting ⭐ 5

MaxQuant and Perseus Bug Reporting

1-55 of 55 search results

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