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8 search results found

Sigprofilermatrixgenerator ⭐ 91

SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

Hic2cool ⭐ 50

Lightweight converter between hic and cool contact matrices.

Sigprofilermatrixgeneratorr ⭐ 17

R wrapper for utilizing the SigProfilerMatrixGenerator framework

Hicreppy ⭐ 14

Python reimplementation of hicrep with compatibility for sparse matrices

Uncurl_python ⭐ 14

UNCURL is a tool for single cell RNA-seq data analysis.

(Multiblock) Partial Least Squares Regression for Python

Programming For Bioinformatics ⭐ 10

Fast RNAseq pipeline

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