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The Top 23 Shell Sequencing Open Source Projects

Open source projects categorized as Shell Sequencing
Categories > Science > Sequencing
Getting Started With Genomics Tools And Resources ⭐ 991
Unix, R and python tools for genomics and data science
most recent commit 3 months ago
Dna Seq Analysis ⭐ 128
DNA sequencing analysis notes from Ming Tang
most recent commit a year ago
Tormes ⭐ 82
Making whole bacterial genome sequencing data analysis easy
most recent commit a year ago
Ngseasy ⭐ 76
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
most recent commit 7 years ago
Atacseq ⭐ 64
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
most recent commit 9 months ago
Sv Plaudit ⭐ 47
Pipeline for structural variant image curation and analysis.
most recent commit 2 years ago
Ddocent ⭐ 46
a bash pipeline for RAD sequencing
most recent commit 2 years ago
Genome Data Integration ⭐ 35
Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
most recent commit 2 years ago
Ctdna Pipeline ⭐ 24
A simplified pipeline for ctDNA sequencing data analysis
most recent commit 7 years ago
Assembler Components ⭐ 20
Components of genome sequence assembly tools
most recent commit 2 years ago
Automap ⭐ 19
Tool to find regions of homozygosity (ROHs) from sequencing data.
most recent commit 7 months ago
Clinicalgradednaseq ⭐ 15
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
most recent commit 4 years ago
Proseq2.0 ⭐ 14
Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing
most recent commit 10 months ago
Ngs_dna ⭐ 13
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
most recent commit 3 months ago
Prophage_tracer ⭐ 13
Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
most recent commit a year ago
Bamtobw ⭐ 13
Convert BAM files to bigWig files with a simple command
most recent commit 5 years ago
Angsd Wrapper ⭐ 13
Utilities for analyzing next generation sequencing data.
most recent commit 4 years ago
Plws ⭐ 11
Phylogenomics from Low-coverage Whole-genome Sequencing
most recent commit 4 years ago
Fqless ⭐ 11
less like viewer for fastq files
most recent commit 5 years ago
Deepvariant On Spark ⭐ 11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
most recent commit 2 years ago
Cpg_me ⭐ 10
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
most recent commit 2 years ago
Cau Tibetanwheatseq ⭐ 10
Customized codes used in Tibetan wheat sequencing project.
most recent commit 2 years ago
Banzai ⭐ 10
Scripts for analyzing Illumina-generated environmental DNA sequence data.
most recent commit 6 years ago
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