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The Top 13 Ngs Snakemake Open Source Projects

Open source projects categorized as Ngs Snakemake
Categories > Science > Ngs
Categories > Snakemake
Snakepipes ⭐ 359
Customizable workflows based on snakemake and python for the analysis of NGS data
most recent commit 3 months ago
Sequana ⭐ 136
Sequana: a set of Snakemake NGS pipelines
dependent packages 8total releases 90most recent commit 4 months agopypi sequana} Downloads
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Ngs_pipeline ⭐ 31
Exome/Capture/RNASeq Pipeline Implementation using snakemake
most recent commit 6 years ago
Atacseq_pipeline ⭐ 25
Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.
most recent commit 3 months ago
Kgwasflow ⭐ 19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
most recent commit 7 months ago
Daylily ⭐ 15
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
most recent commit 6 months ago
Ngs Test Data ⭐ 14
A workflow for creating small NGS test data sets, useful for continuous integration.
most recent commit 4 years ago
Ngs Pipeline ⭐ 12
Pipeline for Somatic Variant Calling with WES and WGS data
most recent commit a year ago
Assnake ⭐ 10
Snakemake based framework for NGS data analysis and management
total releases 9most recent commit 3 years ago
Monsda ⭐ 10
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
total releases 14most recent commit 5 months ago
Snakemake Slurm Tutorial ⭐ 5
Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler
most recent commit 5 years ago
The 3 Latest Releases In Ngs Snakemake Open Source Projects
Sequana ⭐ 136
Sequana: a set of Snakemake NGS pipelines
dependent packages 8total releases 90latest release December 06, 2023most recent commit 4 months agopypi sequana} Downloads
Monsda ⭐ 10
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
total releases 14latest release November 26, 2023most recent commit 5 months ago
Assnake ⭐ 10
Snakemake based framework for NGS data analysis and management
total releases 9latest release March 26, 2020most recent commit 3 years ago
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