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The Top 23 Visualization Genomics Open Source Projects

Open source projects categorized as Visualization Genomics
Categories > Science > Genomics
Categories > User Interface > Visualization
Seurat ⭐ 2,025
R toolkit for single cell genomics
dependent packages 2total releases 16most recent commit 3 months ago
Igv.js ⭐ 608
Embeddable genomic visualization component based on the Integrative Genomics Viewer
dependent packages 11total releases 110most recent commit 3 months agonpm igv} Downloads
Igv ⭐ 589
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
most recent commit 3 months ago
Cbioportal ⭐ 535
cBioPortal for Cancer Genomics
most recent commit 3 months ago
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13most recent commit 4 months agopypi pycirclize} Downloads
Higlass ⭐ 300
Fast, flexible and extensible genome browser.
dependent packages 43total releases 240most recent commit 2 months agonpm higlass} Downloads
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43most recent commit 3 months ago
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76most recent commit 3 months agonpm ideogram} Downloads
Sequenceserver ⭐ 259
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
total releases 68most recent commit 3 months ago
Ribbon ⭐ 249
A genome browser that shows long reads and complex variants better
most recent commit a year ago
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16most recent commit 5 months ago
Hicexplorer ⭐ 197
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
most recent commit 5 months ago
Jbrowse Components ⭐ 182
Source code for JBrowse 2, a modern React-based genome browser
dependent packages 26total releases 79most recent commit a month agonpm @jbrowse/core} Downloads
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23most recent commit 6 months agopypi pygenomeviz} Downloads
Gosling.js ⭐ 152
Grammar of Scalable Linked Interactive Nucleotide Graphics
dependent packages 5total releases 75most recent commit 3 months agonpm gosling.js} Downloads
Wally ⭐ 86
Wally: Visualization of aligned sequencing reads and contigs
most recent commit 3 months ago
Ggnomics ⭐ 69
A small project to add ggplot2 extensions
most recent commit 4 years ago
Geneticsmakie.jl ⭐ 66
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
most recent commit 3 months ago
Mavis ⭐ 65
Merging, Annotation, Validation, and Illustration of Structural variants
total releases 41most recent commit 8 months ago
Splitthreader ⭐ 60
Explore rearrangements and copy-number amplifications in a cancer genome
most recent commit 3 years ago
Palimpsest ⭐ 56
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
most recent commit 3 years ago
Radiator ⭐ 53
RADseq Data Exploration, Manipulation and Visualization using R
most recent commit a year ago
Genomegtftools ⭐ 52
convert various features into a GFF-like file for use in genome browsers
most recent commit 5 months ago
The 10 Most Depended On Visualization Genomics Open Source Projects
Higlass ⭐ 300
Fast, flexible and extensible genome browser.
dependent packages 43total releases 240latest release November 28, 2023most recent commit 2 months agonpm higlass} Downloads
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16latest release December 08, 2023most recent commit 5 months ago
Jbrowse Components ⭐ 182
Source code for JBrowse 2, a modern React-based genome browser
dependent packages 26total releases 79latest release November 30, 2023most recent commit a month agonpm @jbrowse/core} Downloads
Igv.js ⭐ 608
Embeddable genomic visualization component based on the Integrative Genomics Viewer
dependent packages 11total releases 110latest release September 15, 2023most recent commit 3 months agonpm igv} Downloads
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76latest release September 05, 2023most recent commit 3 months agonpm ideogram} Downloads
Gosling.js ⭐ 152
Grammar of Scalable Linked Interactive Nucleotide Graphics
dependent packages 5total releases 75latest release December 04, 2023most recent commit 3 months agonpm gosling.js} Downloads
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13latest release July 20, 2023most recent commit 4 months agopypi pycirclize} Downloads
Seurat ⭐ 2,025
R toolkit for single cell genomics
dependent packages 2total releases 16latest release November 13, 2022most recent commit 3 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
The 10 Latest Releases In Visualization Genomics Open Source Projects
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16latest release December 08, 2023most recent commit 5 months ago
Gosling.js ⭐ 152
Grammar of Scalable Linked Interactive Nucleotide Graphics
dependent packages 5total releases 75latest release December 04, 2023most recent commit 3 months agonpm gosling.js} Downloads
Jbrowse Components ⭐ 182
Source code for JBrowse 2, a modern React-based genome browser
dependent packages 26total releases 79latest release November 30, 2023most recent commit a month agonpm @jbrowse/core} Downloads
Higlass ⭐ 300
Fast, flexible and extensible genome browser.
dependent packages 43total releases 240latest release November 28, 2023most recent commit 2 months agonpm higlass} Downloads
Glue Genes ⭐ 7
glue for genomics and transcriptomics
total releases 7latest release November 22, 2023most recent commit 5 months ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Aniclustermap ⭐ 38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
total releases 5latest release November 07, 2023most recent commit 6 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
Igv.js ⭐ 608
Embeddable genomic visualization component based on the Integrative Genomics Viewer
dependent packages 11total releases 110latest release September 15, 2023most recent commit 3 months agonpm igv} Downloads
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