Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Genomics Single Cell Open Source Projects

Open source projects categorized as Genomics Single Cell
Categories > Science > Genomics
Categories > Single Cell
Awesome Omics ⭐ 536
A collection of awesome things regarding all omics.
most recent commit 3 months ago
Scrna Seq_notes ⭐ 478
A list of scRNA-seq analysis tools
most recent commit 4 months ago
Octopus ⭐ 285
Bayesian haplotype-based mutation calling
most recent commit 8 months ago
Scrnaseq ⭐ 119
A single-cell RNAseq pipeline for 10X genomics data
most recent commit 3 months ago
Mgatk ⭐ 89
mgatk: mitochondrial genome analysis toolkit
total releases 20most recent commit 3 months ago
Chemcpa ⭐ 71
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
most recent commit 6 months ago
Cut Runtools 2.0 ⭐ 62
CUT&RUN and CUT&Tag data processing and analysis
most recent commit a year ago
Scvae ⭐ 52
Deep learning for single-cell transcript counts
total releases 10most recent commit 4 years ago
Magma_celltyping ⭐ 50
Find causal cell-types underlying complex trait genetics
most recent commit 8 months ago
Sscclust ⭐ 32
simpler single cell RNAseq data clustering
most recent commit a year ago
Cellar ⭐ 30
Interactive software tool for the assignment of cell types in single-cell studies.
most recent commit a year ago
Gcmodeller ⭐ 27
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
most recent commit 3 months ago
Netsmooth ⭐ 18
netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
most recent commit 4 years ago
Muto_wilson_ncomm_2020 ⭐ 17
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
most recent commit a year ago
Switchde ⭐ 15
Inference of switch-like differential expression along single-cell trajectories
most recent commit 7 years ago
Omicssuite.github.io ⭐ 15
OmicsSuite website for releasing new version.
most recent commit 4 months ago
Dropclust ⭐ 15
Version 2.1.0 released
most recent commit 5 years ago
Cellrangerrkit ⭐ 14
Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
most recent commit 5 years ago
Mdmcleaner ⭐ 13
MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
total releases 5most recent commit a year ago
Clustassess ⭐ 13
Tools for assessing clustering robustness
total releases 3most recent commit 2 years ago
Scgv ⭐ 8
SCGV is an interactive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer
most recent commit 2 years ago
Ngs17 ⭐ 8
Materials used during #NGSchool2017
most recent commit 7 years ago
Single Cell Experiments ⭐ 7
Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark
most recent commit 5 years ago
The 5 Latest Releases In Genomics Single Cell Open Source Projects
Mgatk ⭐ 89
mgatk: mitochondrial genome analysis toolkit
total releases 20latest release January 15, 2023most recent commit 3 months ago
Clustassess ⭐ 13
Tools for assessing clustering robustness
total releases 3latest release January 26, 2022most recent commit 2 years ago
Scvae ⭐ 52
Deep learning for single-cell transcript counts
total releases 10latest release June 30, 2020most recent commit 4 years ago
Popular Science Categories
Physics
Genome
Scientific
Medical
Genomics
Sequencing
Molecule
Evolution
Astronomy
Dna
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.