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The Top 23 Perl Genomics Open Source Projects

Open source projects categorized as Perl Genomics
Categories > Science > Genomics
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83most recent commit 2 years ago
Edge ⭐ 70
EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
most recent commit 2 years ago
Sgn ⭐ 63
The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites
most recent commit 3 months ago
Simug ⭐ 58
simuG: a general-purpose genome simulator
most recent commit 2 years ago
Raptor ⭐ 50
Graph-based mapping of long sequences, noisy or HiFi.
most recent commit 4 years ago
Assembly_improvement ⭐ 39
Improve the quality of a denovo assembly by scaffolding and gap filling
most recent commit 4 years ago
Get_phylomarkers ⭐ 39
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
most recent commit a year ago
Gawn ⭐ 37
Genome Annotation Without Nightmares
most recent commit 6 months ago
Genome Annotation Pipeline ⭐ 36
Genome annotation pipeline
most recent commit 4 months ago
Hotspot3d ⭐ 33
3D hotspot mutation proximity analysis tool
most recent commit 5 years ago
Mtbseq_source ⭐ 32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
most recent commit 8 months ago
Pgcgap ⭐ 29
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
most recent commit a year ago
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Lrsday ⭐ 27
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
most recent commit 7 months ago
Panpop ⭐ 24
Application of pan-genome for population
most recent commit 3 months ago
Ratite Genomics ⭐ 19
Scripts and other material for the assembly and analysis of ratite genomes.
most recent commit a year ago
Wgs2ncbi ⭐ 18
Toolkit for preparing genomes for submission to NCBI
most recent commit 3 years ago
Bedanno ⭐ 17
Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104
most recent commit 2 years ago
Starfish ⭐ 16
starfish: a modular toolkit for giant mobile element annotation
most recent commit 4 months ago
Bio Tradis ⭐ 15
A set of tools to analyse the output from TraDIS analyses
total releases 14most recent commit 9 months ago
Sandy ⭐ 14
A straightforward and complete next-generation sequencing read simulator
total releases 9most recent commit 5 months ago
The 5 Latest Releases In Perl Genomics Open Source Projects
Sandy ⭐ 14
A straightforward and complete next-generation sequencing read simulator
total releases 9latest release September 19, 2023most recent commit 5 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Bio Tradis ⭐ 15
A set of tools to analyse the output from TraDIS analyses
total releases 14latest release December 04, 2019most recent commit 9 months ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83latest release November 06, 2019most recent commit 2 years ago
Mlst_check ⭐ 14
Multilocus sequence typing by blast using the schemes from PubMLST
total releases 13latest release March 03, 2017most recent commit 3 years ago
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