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The Top 14 Nim Genomics Open Source Projects

Open source projects categorized as Nim Genomics
Somalier ⭐ 224
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
most recent commit 7 months ago
Slivar ⭐ 221
genetic variant expressions, annotation, and filtering for great good.
most recent commit 5 months ago
Hts Nim ⭐ 151
nim wrapper for htslib for parsing genomics data files
most recent commit 8 months ago
Jigv ⭐ 115
igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
most recent commit 10 months ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 5 months ago
Duphold ⭐ 73
don't get DUP'ed or DEL'ed by your putative SVs.
most recent commit 3 years ago
Hts Nim Tools ⭐ 41
useful command-line tools written to show-case hts-nim
most recent commit 3 years ago
Indelope ⭐ 39
find large indels (in the blind spot between GATK/freebayes and SV callers)
most recent commit 6 years ago
Seqcover ⭐ 38
seqcover allows user to view coverage for hundreds of genes and dozens of samples
most recent commit 3 years ago
Genoiser ⭐ 16
use the noise
most recent commit 4 years ago
Bigwig Nim ⭐ 11
command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig
most recent commit 4 years ago
Falas ⭐ 6
Fragment-Aware Local Assembly for Short-reads
most recent commit 5 years ago
Bpbio ⭐ 5
basepair bio: a single binary with many useful genomics subtools.
most recent commit 5 years ago
Variantkey Nim ⭐ 5
nim-wrapper for variantkey -- (chrom, pos, ref, alt) -> uint64
most recent commit 5 years ago
The 4 Latest Releases In Nim Genomics Open Source Projects
Variantkey Nim ⭐ 5
nim-wrapper for variantkey -- (chrom, pos, ref, alt) -> uint64
latest release November 27, 2023most recent commit 5 years ago
Falas ⭐ 6
Fragment-Aware Local Assembly for Short-reads
latest release November 27, 2023most recent commit 5 years ago
Genoiser ⭐ 16
use the noise
latest release November 22, 2023most recent commit 4 years ago
Hts Nim ⭐ 151
nim wrapper for htslib for parsing genomics data files
latest release February 01, 2022most recent commit 8 months ago
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