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The Top 23 Genomics Nextflow Open Source Projects

Open source projects categorized as Genomics Nextflow
Categories > Science > Genomics
Categories > Nextflow
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 3 months ago
Flowcraft ⭐ 234
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦
total releases 18most recent commit 4 years ago
Sarek ⭐ 126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
most recent commit 4 years ago
Scrnaseq ⭐ 119
A single-cell RNAseq pipeline for 10X genomics data
most recent commit 3 months ago
Dolphinnext ⭐ 92
A graphical user interface for distributed data processing of high throughput genomics
most recent commit a year ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Rnaseq Nf ⭐ 59
A proof of concept of RNAseq pipeline
most recent commit 6 months ago
Rare Disease Wf ⭐ 49
(WIP) best-practices workflow for rare disease
most recent commit a year ago
Bactmap ⭐ 45
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
most recent commit 7 months ago
Aws For Bioinformatics ⭐ 38
AWS for Bioinformatics Researchers
most recent commit 3 months ago
Circrna ⭐ 32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
most recent commit 3 months ago
Nf Hack17 Tutorial ⭐ 31
Nextflow basic tutorial for newbie users
most recent commit 6 years ago
Compare_genomes ⭐ 23
A comparative genomics workflow using Nextflow, conda, Julia and R
most recent commit 6 months ago
Variant_catalogue_pipeline ⭐ 20
Variant catalogue pipeline
most recent commit 4 months ago
Spandx ⭐ 20
SPANDx - Comparative genomics for next-generation haploid sequence data
most recent commit 5 months ago
Companion ⭐ 19
Pipeline for automatic eukaryotic parasite annotation
most recent commit 3 years ago
Circdna ⭐ 18
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
most recent commit 4 months ago
Treeval ⭐ 17
Pipelines for the production of Treeval data
most recent commit 4 months ago
Bactpipe ⭐ 17
BACTpipe: An assembly and annotation pipeline for bacterial genomics
most recent commit 2 years ago
Genomenote ⭐ 16
This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.
most recent commit 4 months ago
Covigator Ngs Pipeline ⭐ 15
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
most recent commit 6 months ago
Grandeur ⭐ 13
UPHL's Reference Free Pipeline
most recent commit 5 months ago
Lodestone ⭐ 11
Mycobacterial pipeline
most recent commit 5 months ago
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