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The Top 23 Genome Open Source Projects

Open source projects categorized as Genome
Categories > Science > Genome
Soapdenovo2 ⭐ 197
Next generation sequencing reads de novo assembler.
most recent commit 6 months ago
Kent ⭐ 197
UCSC Genome Browser source tree. Stable branch: "beta".
most recent commit 3 months ago
Nanosim ⭐ 196
Nanopore sequence read simulator
most recent commit 5 months ago
Basset ⭐ 195
Convolutional neural network analysis for predicting DNA sequence activity.
most recent commit 4 years ago
Doc Annovar ⭐ 193
Documentation for the ANNOVAR software
most recent commit 5 months ago
Circlator ⭐ 193
A tool to circularize genome assemblies
total releases 33most recent commit 8 months ago
Artemis ⭐ 191
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
most recent commit a year ago
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6most recent commit 3 months ago
Dndscv ⭐ 189
dN/dS methods to quantify selection in cancer and somatic evolution
most recent commit 7 months ago
Gaas ⭐ 188
Genome Assembly and Annotation Service code
most recent commit 4 months ago
Chip Seq Pipeline2 ⭐ 188
ENCODE ChIP-seq pipeline
most recent commit 2 years ago
Asciigenome ⭐ 188
Text Only Genome Viewer!
most recent commit 7 months ago
Genvisr ⭐ 188
Genome data visualizations
most recent commit a year ago
Flair ⭐ 181
Full-Length Alternative Isoform analysis of RNA
total releases 7most recent commit 3 months ago
Raven ⭐ 177
De novo genome assembler for long uncorrected reads
most recent commit 5 months ago
Methylkit ⭐ 176
R package for DNA methylation analysis
most recent commit 3 months ago
Gtotree ⭐ 174
A user-friendly workflow for phylogenomics
most recent commit 5 months ago
Kubegene ⭐ 169
KubeGene - A turn-key Genome Sequencing workflow management framework
most recent commit 3 years ago
Aligngraph ⭐ 165
Algorithm for secondary de novo genome assembly guided by closely related references
most recent commit 4 years ago
Tetranscripts ⭐ 164
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
most recent commit 8 months ago
Vgp Assembly ⭐ 160
VGP repository for the genome assembly working group
most recent commit a year ago
Genrich ⭐ 158
Detecting sites of genomic enrichment
most recent commit a year ago
Insilicoseq ⭐ 158
🚀 A sequencing simulator
dependent packages 1total releases 37most recent commit 4 months agopypi InSilicoSeq} Downloads
The 10 Latest Releases In Genome Open Source Projects
Segment Liftover ⭐ 15
Lifterover copy number segments in whole
total releases 22latest release October 21, 2021most recent commit 3 years ago
Pyfba ⭐ 21
A python implementation of flux balance analysis to model microbial metabolism
total releases 20latest release October 21, 2021most recent commit a year ago
Seqseek ⭐ 45
Easy access to human reference genome sequences
dependent packages 1total releases 16latest release October 01, 2021most recent commit 3 years agopypi seqseek} Downloads
Asmc ⭐ 7
Ascertained Sequentially Markovian Coalescent
dependent packages 1total releases 4latest release September 28, 2021most recent commit 7 months agopypi asmc-asmc} Downloads
Gts ⭐ 6
GTS: Genome Transformation Subprograms
total releases 82latest release September 28, 2021most recent commit 3 years ago
Toil Vg ⭐ 9
Distributed and cloud computing framework for vg
total releases 415latest release September 23, 2021most recent commit 3 years ago
Novowrap ⭐ 6
Assembly chloroplast genome and validate conformation
total releases 11latest release August 10, 2021most recent commit 3 years ago
Metator ⭐ 20
Metagenomic binning based on Hi-C data
total releases 17latest release July 23, 2021most recent commit 3 months ago
Soda ⭐ 12
Python-based UCSC genome browser snapshot-taker and gallery-maker
total releases 2latest release June 14, 2021most recent commit 3 years ago
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