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The Top 23 Plot Genome Open Source Projects

Open source projects categorized as Plot Genome
Pygenometracks ⭐ 654
python module to plot beautiful and highly customizable genome browser tracks
most recent commit 9 months ago
Samplot ⭐ 458
Plot structural variant signals from many BAMs and CRAMs
total releases 3most recent commit 5 months ago
Karyoploter ⭐ 278
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
most recent commit 3 months ago
Checkm ⭐ 235
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
most recent commit a year ago
Merqury ⭐ 234
k-mer based assembly evaluation
most recent commit 4 months ago
Ngs_learning ⭐ 131
生物信息学交流资料
most recent commit 4 years ago
Dgenies ⭐ 85
Dotplot large Genomes in an Interactive, Efficient and Simple way
most recent commit 4 months ago
Mummer2circos ⭐ 79
Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
most recent commit 4 months ago
Jupiterplot ⭐ 54
A Circos-based tool to visualize genome assembly consistency
most recent commit a year ago
Dot ⭐ 43
Dot: An interactive dot plot viewer for comparative genomics
most recent commit 4 years ago
Pauvre ⭐ 43
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
dependent packages 2total releases 27most recent commit a year agopypi pauvre} Downloads
Allhic ⭐ 41
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
total releases 8most recent commit 3 years ago
Blobology ⭐ 40
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)
most recent commit 7 years ago
Gtrellis ⭐ 36
Genomic plot in trellis layout
most recent commit a year ago
Genomeuplot ⭐ 32
The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.
most recent commit 2 years ago
Reconcnv ⭐ 18
visualize CNV data from targeted capture based sequencing data
most recent commit 3 years ago
Pipe4c ⭐ 17
4C-seq processing pipeline
most recent commit 5 months ago
Chromeister ⭐ 16
A dotplot generator for large chromosomes
most recent commit 2 years ago
Opqua ⭐ 16
Epidemiological modeling framework for pathogen population genetics and evolution.
total releases 32most recent commit 3 months ago
Pafr ⭐ 14
Read, manipulate and visualize 'Pairwise mApping Format' data in R
total releases 1most recent commit 3 years ago
Bs3 ⭐ 14
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
most recent commit 5 years ago
Prophagepredictioncomparisons ⭐ 14
Comparisons of multiple different prophage predictions
most recent commit 2 years ago
Amplicon_coverage_plot ⭐ 12
interactive barplot for amplicon sequencing
total releases 10most recent commit a year ago
The 10 Latest Releases In Plot Genome Open Source Projects
Amplicon_coverage_plot ⭐ 12
interactive barplot for amplicon sequencing
total releases 10latest release January 12, 2023most recent commit a year ago
Opqua ⭐ 16
Epidemiological modeling framework for pathogen population genetics and evolution.
total releases 32latest release November 17, 2022most recent commit 3 months ago
Recan ⭐ 9
genetic distance plotting for recombination events analysis
total releases 6latest release September 19, 2022most recent commit 3 months ago
Allhic ⭐ 41
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
total releases 8latest release May 24, 2021most recent commit 3 years ago
Pauvre ⭐ 43
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
dependent packages 2total releases 27latest release May 04, 2021most recent commit a year agopypi pauvre} Downloads
Pafr ⭐ 14
Read, manipulate and visualize 'Pairwise mApping Format' data in R
total releases 1latest release December 08, 2020most recent commit 3 years ago
Samplot ⭐ 458
Plot structural variant signals from many BAMs and CRAMs
total releases 3latest release October 11, 2020most recent commit 5 months ago
Alfa ⭐ 9
ALFA: Annotation Landscape for Aligned Reads
total releases 29latest release June 20, 2019most recent commit 4 years ago
Python Genome Browser ⭐ 9
Tools for making plots of genomic datasets in a genome-browser-like format
total releases 8latest release September 21, 2018most recent commit 6 years ago
Afplot ⭐ 6
Plot allele frequencies in VCF files
total releases 3latest release July 11, 2017most recent commit 5 years ago
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