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The Top 23 Perl Genome Open Source Projects

Open source projects categorized as Perl Genome
Vcftools ⭐ 415
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
most recent commit a year ago
Prokka ⭐ 415
⚡ ♒ Rapid prokaryotic genome annotation
most recent commit 3 years ago
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Edta ⭐ 294
Extensive de-novo TE Annotator
most recent commit 3 months ago
Braker ⭐ 293
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
most recent commit 3 months ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83most recent commit 2 years ago
Gaas ⭐ 188
Genome Assembly and Annotation Service code
most recent commit 4 months ago
Metabolic ⭐ 148
A scalable high-throughput metabolic and biogeochemical functional trait profiler
most recent commit 3 months ago
Novoplasty ⭐ 140
NOVOPlasty - The organelle assembler and heteroplasmy caller
most recent commit 8 months ago
Mcscanx ⭐ 135
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
most recent commit a year ago
Mirdeep2 ⭐ 120
Discovering known and novel miRNAs from small RNA sequencing data
most recent commit 5 months ago
Shovill ⭐ 104
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
most recent commit 4 years ago
Biopieces ⭐ 102
Biopieces is a bioinformatic framework of tools easily used and easily created.
most recent commit 6 years ago
Get_homologues ⭐ 98
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
most recent commit 3 months ago
Metamaps ⭐ 88
Long-read metagenomic analysis
most recent commit 7 months ago
Nullarbor ⭐ 80
💾 📃 "Reads to report" for public health and clinical microbiology
most recent commit 4 years ago
Mitobim ⭐ 74
MITObim - mitochondrial baiting and iterative mapping
most recent commit 6 years ago
Scrnaseqpipeline ⭐ 73
most recent commit 6 years ago
Gms ⭐ 70
The Genome Modeling System installer
most recent commit 9 years ago
Multi Metagenome ⭐ 65
Scripts and tutorials on how to assemble individual microbial genomes from metagenomes
most recent commit 8 years ago
Genome ⭐ 62
Core modules used by the GMS
most recent commit 5 months ago
Feelnc ⭐ 61
FEELnc : FlExible Extraction of LncRNA
most recent commit 2 years ago
Pirate ⭐ 58
A toolbox for pangenome analysis and threshold evaluation.
most recent commit 2 years ago
The 2 Latest Releases In Perl Genome Open Source Projects
Clipseqtools ⭐ 11
A suite for the analysis of CLIP-Seq datasets.
total releases 13latest release January 31, 2022most recent commit 2 years ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83latest release November 06, 2019most recent commit 2 years ago
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