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The Top 23 Java Genome Open Source Projects

Open source projects categorized as Java Genome
Gridss ⭐ 212
GRIDSS: the Genomic Rearrangement IDentification Software Suite
most recent commit a year ago
Artemis ⭐ 191
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
most recent commit a year ago
Asciigenome ⭐ 188
Text Only Genome Viewer!
most recent commit 7 months ago
Ngb ⭐ 151
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
most recent commit 3 months ago
Mcscanx ⭐ 135
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
most recent commit a year ago
Genomewarp ⭐ 96
GenomeWarp translates genetic variants from one genome assembly version to another.
most recent commit 10 months ago
Minced ⭐ 80
Mining CRISPRs in Environmental Datasets
most recent commit a year ago
Genome Nexus ⭐ 38
Backend server for Genome Nexus
most recent commit 4 months ago
Crossstitch ⭐ 35
Code for phasing SVs with SNPs
most recent commit 4 years ago
Depict ⭐ 34
DEPICT code, instructions and an example
most recent commit 2 years ago
Cgview ⭐ 30
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
most recent commit 8 months ago
Mutserve ⭐ 29
mtDNA Variant Caller
most recent commit 3 months ago
Medusa ⭐ 25
A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
most recent commit 3 years ago
Mga ⭐ 24
The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.
most recent commit 3 years ago
Varnote ⭐ 23
Fast and scalable variant annotation tool
most recent commit 2 years ago
Mageri ⭐ 19
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
most recent commit 7 years ago
Symap ⭐ 17
Synteny Mapping and Analysis Program
most recent commit 5 months ago
Genomeflow ⭐ 16
GenomeFlow: A Graphical Tool for Modeling and Analyzing 3D Genome Structure
most recent commit 5 years ago
Csbfinder ⭐ 15
A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
most recent commit a year ago
Pantools ⭐ 15
PanTools
most recent commit 5 years ago
Argon ⭐ 15
Fast, whole-genome simulation of the discrete time Wright-Fisher process
most recent commit 4 years ago
Tiger ⭐ 13
Toolkits Integrated for Genetic and Evolutionary Research
most recent commit 5 months ago
Vigor4 ⭐ 13
VIGOR4
most recent commit 2 years ago
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