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The Top 22 Bioinformatics Snps Open Source Projects

Open source projects categorized as Bioinformatics Snps
Categories > Data Processing > Bioinformatics
Categories > Snps
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Strelka ⭐ 204
Strelka2 germline and somatic small variant caller
most recent commit 5 years ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38most recent commit a year ago
Snprelate ⭐ 90
R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
most recent commit 3 months ago
Snps ⭐ 82
tools for reading, writing, merging, and remapping SNPs
dependent packages 2total releases 42most recent commit 3 months agopypi snps} Downloads
Arv ⭐ 75
A fast 23andMe DNA parser and inferrer for Python
total releases 11most recent commit 4 years ago
Dna Traits ⭐ 64
A fast 23andMe genome text file parser, now superseded by arv
most recent commit 6 years ago
Seqarray ⭐ 41
Data management of large-scale whole-genome sequence variant calls (Development version only)
most recent commit 3 months ago
Geneticvariation.jl ⭐ 33
Datastructures and algorithms for working with genetic variation
most recent commit a year ago
16gt ⭐ 26
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
most recent commit 4 years ago
Hibag ⭐ 23
R package – HLA Genotype Imputation with Attribute Bagging (development version only)
most recent commit 3 months ago
Gssplayground ⭐ 21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
most recent commit 4 years ago
Proxysnps ⭐ 21
🔖 Get SNP proxies from the 1000 Genomes Project.
most recent commit 6 years ago
Phat ⭐ 17
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
most recent commit 2 years ago
Snpbinner ⭐ 17
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
most recent commit 5 years ago
Mutation Simulator ⭐ 16
A tool for simulating random mutations in any genome
most recent commit a year ago
Vargeno ⭐ 15
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
most recent commit 5 years ago
Psdm ⭐ 10
Compute a pairwise SNP distance matrix from one or two alignment(s)
total releases 2most recent commit 2 years ago
Bioinformatics ⭐ 10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
most recent commit 6 months ago
Vizsnp St ⭐ 5
Visualizing the effect of SNPs on protein structure using iCn3D
most recent commit a year ago
Rdna Nexus ⭐ 5
Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench
most recent commit 5 months ago
The 5 Latest Releases In Bioinformatics Snps Open Source Projects
Psdm ⭐ 10
Compute a pairwise SNP distance matrix from one or two alignment(s)
total releases 2latest release June 13, 2022most recent commit 2 years ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38latest release June 07, 2022most recent commit a year ago
Snps ⭐ 82
tools for reading, writing, merging, and remapping SNPs
dependent packages 2total releases 42latest release June 06, 2022most recent commit 3 months agopypi snps} Downloads
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Arv ⭐ 75
A fast 23andMe DNA parser and inferrer for Python
total releases 11latest release March 29, 2017most recent commit 4 years ago
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