Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Genrich | 158 | a year ago | 9 | mit | C | |||||
Detecting sites of genomic enrichment | ||||||||||
Badread | 124 | 5 months ago | 10 | gpl-3.0 | Python | |||||
a long read simulator that can imitate many types of read problems | ||||||||||
Instagraal | 33 | 1 | a year ago | 6 | March 21, 2019 | 4 | gpl-3.0 | Cuda | ||
Large genome reassembly based on Hi-C data, continuation of GRAAL | ||||||||||
Socru | 23 | 5 months ago | 3 | gpl-3.0 | Python | |||||
Order and orientation of complete bacterial genomes | ||||||||||
Chip Nf | 13 | 2 years ago | Nextflow | |||||||
An automated ChIP-seq pipeline using Nextfow | ||||||||||
Graal | 13 | 4 years ago | 8 | Python | ||||||
(check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714) | ||||||||||
R.4cker | 12 | 4 years ago | 42 | mit | R | |||||
Plot2do | 11 | 3 years ago | 1 | mit | R | |||||
A tool to assess the quality and distribution of genomic data | ||||||||||
Snaptools | 11 | 4 years ago | 22 | September 04, 2019 | 20 | apache-2.0 | Python | |||
A module for working with snap files in Python | ||||||||||
Asgart | 10 | 3 years ago | gpl-3.0 | Rust | ||||||
A genome-scale, fast, and precise segmental duplications mapping tool |