Gcv
Federating genomes with love (and synteny derived from functional annotations)
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Funannotate | 261 | 5 months ago | 13 | August 10, 2022 | 204 | bsd-2-clause | Python | |||
| Eukaryotic Genome Annotation Pipeline | ||||||||||
| Ngmlr | 230 | 3 years ago | 41 | mit | C++ | |||||
| NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations | ||||||||||
| Ngb | 151 | 3 months ago | 290 | mit | Java | |||||
| New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support | ||||||||||
| Blobtools | 136 | 2 years ago | 17 | gpl-3.0 | Python | |||||
| Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets | ||||||||||
| Ampliconarchitect | 119 | 5 months ago | 62 | other | Python | |||||
| AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon. | ||||||||||
| Instrain | 104 | 8 months ago | 59 | August 25, 2023 | 10 | mit | Python | |||
| Bioinformatics program inStrain | ||||||||||
| Peregrine | 94 | 2 years ago | 22 | other | Jupyter Notebook | |||||
| Peregrine: Fast Genome Assembler Using SHIMMER Index | ||||||||||
| Bacannot | 85 | 5 months ago | 10 | gpl-3.0 | Nextflow | |||||
| Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app. | ||||||||||
| Ngseasy | 76 | 7 years ago | 9 | gpl-2.0 | Shell | |||||
| Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation) | ||||||||||
| Mitobim | 74 | 6 years ago | 19 | mit | Perl | |||||
| MITObim - mitochondrial baiting and iterative mapping | ||||||||||
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