Pybnf
An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Muscle | 134 | 6 months ago | 14 | gpl-3.0 | C++ | |||||
| Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures. | ||||||||||
| Onto_merger | 85 | 8 months ago | 1 | June 08, 2022 | 2 | apache-2.0 | HTML | |||
| OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain. | ||||||||||
| Cath Tools | 51 | 6 months ago | 21 | gpl-3.0 | C++ | |||||
| Protein structure comparison tools such as SSAP and SNAP | ||||||||||
| Biopy | 29 | 8 years ago | 1 | Python | ||||||
| Biologically-Inspired and Machine Learning Algorithms written in Python | ||||||||||
| Pybnf | 24 | 5 months ago | 48 | other | Python | |||||
| An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm. | ||||||||||
| Til | 24 | 2 years ago | Python | |||||||
| today I learned.. | ||||||||||
| Genefinder.jl | 12 | 4 months ago | mit | Julia | ||||||
| A Gene Finder framework for Julia. | ||||||||||
| Newick | 10 | 8 months ago | 3 | gpl-3.0 | C++ | |||||
| Manipulate and generate figures for trees in Newick format | ||||||||||
| See Segment | 6 | 9 months ago | 52 | mit | Jupyter Notebook | |||||
| Simple Evolutionary Exploration - Image Segmentation | ||||||||||
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Python
Algorithms
Biology
Model Checking