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Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

Onto_merger ⭐ 85

OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.

Cath Tools ⭐ 51

Protein structure comparison tools such as SSAP and SNAP

Biologically-Inspired and Machine Learning Algorithms written in Python

An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm.

today I learned..

Genefinder.jl ⭐ 12

A Gene Finder framework for Julia.

Manipulate and generate figures for trees in Newick format

See Segment ⭐ 6

Simple Evolutionary Exploration - Image Segmentation

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