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The Top 23 Biology Open Source Projects

Open source projects categorized as Biology
Categories > Science > Biology
Deepchem ⭐ 4,876
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
dependent packages 8total releases 756most recent commit 3 months agopypi deepchem} Downloads
Thrive ⭐ 2,492
The main repository for the development of the evolution game Thrive.
most recent commit 3 months ago
Openworm ⭐ 2,214
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
most recent commit 5 months ago
Deeplearning Biology ⭐ 1,846
A list of deep learning implementations in biology
most recent commit a year ago
Awesome Deepbio ⭐ 1,467
A curated list of awesome deep learning applications in the field of computational biology
most recent commit 5 years ago
Bioicons ⭐ 1,055
A library of free open source icons for science illustrations in biology and chemistry
most recent commit 3 months ago
Getting Started With Genomics Tools And Resources ⭐ 991
Unix, R and python tools for genomics and data science
most recent commit 3 months ago
Tdc ⭐ 889
Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science
dependent packages 4total releases 32most recent commit 4 months agopypi PyTDC} Downloads
Ncbi Genome Download ⭐ 784
Scripts to download genomes from the NCBI FTP servers
dependent packages 6total releases 25most recent commit 9 months agopypi ncbi-genome-download} Downloads
Chemicalx ⭐ 657
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
total releases 10most recent commit 7 months ago
Chainer Chemistry ⭐ 609
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
most recent commit a year ago
Awesome Diversity ⭐ 530
A curated list of amazingly awesome articles, websites and resources about diversity in technology.
most recent commit 3 years ago
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52most recent commit 3 months agopypi biotite} Downloads
Blogs ⭐ 488
Awesome Blogs
most recent commit 4 months ago
Formal Systems In Biology ⭐ 448
Application of formal systems to model biological systems
most recent commit a year ago
Biojs ⭐ 442
🔬A library of JavaScript components to represent biological data
dependent packages 2total releases 1most recent commit 3 years agonpm biojs} Downloads
Jvarkit ⭐ 440
Java utilities for Bioinformatics
most recent commit 6 months ago
Jbrowse ⭐ 437
Full-featured and stable genome browser built with JavaScript and HTML5.
dependent packages 2total releases 30most recent commit a year agonpm @gmod/jbrowse} Downloads
Catalyst.jl ⭐ 402
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
most recent commit 3 months ago
Opentrons ⭐ 372
Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2
dependent packages 6total releases 244most recent commit 3 months agopypi opentrons} Downloads
Smilesdrawer ⭐ 371
A small, highly performant JavaScript component for parsing and drawing SMILES strings. Released under the MIT license.
dependent packages 4total releases 27most recent commit 4 months agonpm smiles-drawer} Downloads
Histolab ⭐ 315
Library for Digital Pathology Image Processing
total releases 21most recent commit 3 months ago
Awesome Biology ⭐ 313
Curated (meta)list of resources for Biology.
most recent commit 3 months ago
The 10 Most Depended On Biology Open Source Projects
Taxize ⭐ 256
A taxonomic toolbelt for R
dependent packages 38total releases 46latest release April 22, 2022most recent commit 3 months ago
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 3 months agopypi biotite} Downloads
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Clustergrammer ⭐ 228
An interactive heatmap visualization built using D3.js
dependent packages 11total releases 75latest release March 14, 2018most recent commit a year agonpm clustergrammer} Downloads
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18latest release May 11, 2022most recent commit 2 years agonuget BioFSharp} Downloads
Deepchem ⭐ 4,876
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
dependent packages 8total releases 756latest release December 08, 2023most recent commit 3 months agopypi deepchem} Downloads
Opentrons ⭐ 372
Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2
dependent packages 6total releases 244latest release December 11, 2023most recent commit 3 months agopypi opentrons} Downloads
Ncbi Genome Download ⭐ 784
Scripts to download genomes from the NCBI FTP servers
dependent packages 6total releases 25latest release July 28, 2023most recent commit 9 months agopypi ncbi-genome-download} Downloads
The 10 Latest Releases In Biology Open Source Projects
Opentrons ⭐ 372
Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2
dependent packages 6total releases 244latest release December 11, 2023most recent commit 3 months agopypi opentrons} Downloads
Deepchem ⭐ 4,876
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
dependent packages 8total releases 756latest release December 08, 2023most recent commit 3 months agopypi deepchem} Downloads
Pypesto ⭐ 183
python Parameter EStimation TOolbox
dependent packages 3total releases 38latest release December 06, 2023most recent commit 3 months agopypi pypesto} Downloads
Bluecellulab ⭐ 8
Simulating and experimenting on single neurons
dependent packages 1total releases 54latest release December 05, 2023most recent commit 4 months agopypi bluecellulab} Downloads
Pioreactor ⭐ 75
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
total releases 27latest release November 29, 2023most recent commit 3 months ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Cellbase ⭐ 84
High-Performance NoSQL database and RESTful web services to access to most relevant biological data
dependent packages 3total releases 60latest release November 20, 2023most recent commit 3 months ago
Qpcr ⭐ 12
A python package to analyse qPCR data for single-use or high-throughput application
total releases 12latest release October 31, 2023most recent commit 6 months ago
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18latest release September 22, 2023most recent commit 3 months agopypi cogent3} Downloads
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