Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Prokka | 415 | 3 years ago | 112 | Perl | ||||||
:zap: :aquarius: Rapid prokaryotic genome annotation | ||||||||||
Awesome Cancer Variant Databases | 284 | 7 months ago | 1 | mit | ||||||
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants. | ||||||||||
Merqury | 234 | 5 months ago | 16 | other | Shell | |||||
k-mer based assembly evaluation | ||||||||||
Krakenuniq | 201 | 4 months ago | 107 | gpl-3.0 | C++ | |||||
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results | ||||||||||
Artemis | 191 | a year ago | 25 | other | Java | |||||
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation | ||||||||||
Genome_updater | 123 | 4 months ago | 3 | mit | Shell | |||||
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy | ||||||||||
Referenceseeker | 85 | 4 months ago | 12 | January 14, 2022 | 2 | gpl-3.0 | Python | |||
Rapid determination of appropriate reference genomes. | ||||||||||
Bonsai | 68 | 9 months ago | 3 | mit | C++ | |||||
Bonsai: Fast, flexible taxonomic analysis and classification | ||||||||||
Dfast_core | 67 | 8 months ago | 13 | Python | ||||||
DDBJ Fast Annotation and Submission Tool | ||||||||||
Uta | 59 | 4 months ago | 26 | apache-2.0 | Python | |||||
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image |