Rambutan
Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Fithic | 57 |  | 1 | 2 years ago | 22 | February 01, 2022 | 18 | mit | Python | |
| Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C. | ||||||||||
| Peakachu | 42 | 8 months ago | 11 | November 28, 2022 | 8 | mit | Python | |||
| Genome-wide contact analysis using sklearn | ||||||||||
| Rambutan | 20 | 6 years ago | mit | Jupyter Notebook | ||||||
| Prediction of the 3D structure of the genome through statistically significant Hi-C contacts. | ||||||||||
| Genomedisco | 18 | 6 years ago | 1 | Jupyter Notebook | ||||||
| Software for comparing contact maps from HiC, CaptureC and other 3D genome data. | ||||||||||
| Graal | 13 | 4 years ago | 8 | Python | ||||||
| (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714) | ||||||||||
| Nuc_processing | 11 | a year ago | 2 | lgpl-3.0 | Python | |||||
| Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools | ||||||||||
| Tgacbrowser | 10 | 4 years ago | 2 | JavaScript | ||||||
| TGAC's Genome Browser | ||||||||||
| Mogen | 5 | 6 years ago | 2 | gpl-3.0 | Java | |||||
| The software for modeling the 3D structure of a genome using Hi-C chromosome conformation capturing data | ||||||||||
| Otagogalaxy | 5 | 10 years ago | 5 | Perl | ||||||
| 1000 genomes and Merriman Lab Galaxy | ||||||||||
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